Atra023947.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063580.1:6480684-6488315[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.014 0.91 10.7 1.4 1 22 141 162 141 162 0.96 2 13 0.0086 0.58 11.3 0.1 2 20 176 194 176 198 0.95 3 13 0.0011 0.073 14.2 2.9 1 23 237 259 237 259 0.98 4 13 0.0062 0.42 11.8 0.0 2 23 330 352 329 352 0.95 5 13 0.046 3.1 9.0 0.3 2 21 358 377 357 378 0.92 6 13 0.00028 0.019 16.0 1.0 1 23 386 409 386 409 0.97 7 13 3.7e-06 0.00025 21.9 1.0 1 23 429 451 429 451 0.98 8 13 3.7e-06 0.00024 22.0 3.7 1 23 456 478 456 478 0.97 9 13 3e-07 2e-05 25.4 2.3 3 23 491 511 488 511 0.95 10 13 3.3e-05 0.0022 19.0 3.2 1 23 517 539 517 539 0.99 11 13 1.2e-06 7.9e-05 23.5 1.6 2 23 546 567 545 567 0.96 12 13 6.5e-08 4.3e-06 27.5 1.3 1 23 573 595 573 595 0.99 13 13 0.0023 0.15 13.1 0.6 1 23 601 623 601 623 0.98
Sequence Information
- Coding Sequence
- ATGGCGTCGAATTCCACAATCggaaatgaaattatttgtaGGACTTGTATGGGTAAAGAAGGTTTATTTTCCATATTTGAAATCACCCATGATACCATGACGTTAGACTTATTGATATCTTCAGTTACCGGCGTTCagattgaACAAGGTGATGGGTTGCCATCTACTATATGCCTTAATTGTAAAGAAAAGGCAATTACAGCttttgattttaaaagaaaGTCCCAAAATGTAGACAGCACATTAAGGGATTTATTCAAGAAAGAAGAAATTGATACAAATCTTGATGAACAATATGATAACTGTGATGATATAAAAACTGAACTGCATTTGGTTGACAATCCAGACGAGTGCTTAGATGAGTGGGCTGCCATAGATGCTATTGTCAAGAATGAGAATGTTCCTCATGATAACTCGcattatgaatgtaaaaattgTACAGCTGTTTTTGAATCCTTCAAAAAATATCAGCAGcatttgagaaaaaaatgtgtgaaagttGAGATTGATGATTCTAGCAATAATTATTGCCCACTATGTGGCATATATTACTATGATGCTGTTAGTTTGACAAAGCATATGTGGGAGAGTCACACTGACTTAATGGGGCCAAAGAAAAGAGGAAGACCAAGGAAACTAATGACTGGAGCAATAATAAGTAAACTGACTGAAAATGGATTCCACTTAAAGTCTGAagagacaaaaaaatatagttgtaCATTTTGTGATGAAGAATTTAAAACCAAAGAGGATATTCATACTCATCAAAAAGAACATACAGataaGCTGTCATTTTGCCTTTTTTGCAAAAAGACTTATCTTGATAAGAACTACTTTGATAGTCATGTATGCATTATTAATAGGAATAGTCAAAAGGGTGACCAGgaTCCTGATGAGGAGAAAAGTAAACAAGACTTTATGAGTGAAATCACCTTCCAAGAGTTGTTAGGTCCATATGACTCTGAGGAAAACGATTGCATATTAACAGTATGTCCAGTATGTACCGGGGTGTTCCGATCCGAAGACGCTCTCGCCGTTCATACAGACACCGAACATCCCGAGCTCTCACTTAGGTGTAATTTGTGCTCAAAGATGTTTGCTACGGTAAAGTCTGCAAGTCGCCATAGAAATATTTGTAAGCAGATTGAACGAAAATTCAGATGTAGCACATGCGGACTTAAATTTGCTTACGAATTGTCGCTCAACAAACATATTCTGCGATACCATGAGGGTGAAAGTGTTTCAGTTACCTTCATAGATGGTAAATCAAAGGAAACGAGAAAATACCAATGCGATGATTGCGATAAATTTTTTGACAGaaaacaagCTCTCGTTCGACACTCCAAAATACATTCCGATAAATTGCATGAATGTGAAGTATGTAAGAAGAAATTTAATAGAAGTGATAATTTGAGaTCTCACAAACGGATACACGAACCTAGAGATAAATCGAAAGTTACCACCTGCTTATGTTTGTATTGCGGTCGCAGTTTTAACAACTCGTCAAATCTCATCGTGCACATGCGCCGTCATACTGGTGAAAAGCcatataaatgtgatttttgCGGCAaggGATTTCCACGGTCTTCGGATCTACAATGTCACAGGCGATCGCATACTGGTGAAAAACCTTGTATCTGTGGAGTTTGTGGAAAAGGATTTTCACGCAGCAACAAATTGTCCCGTCACATGCGCGTCCATACTGGCGTCAAGCCGTACAAGTGCACTTACTGCGGGAAAGCGTTCTCGCAGAGCAACGACCTCACGCTGCATGTCAGGAGGCATACCGGTGATAAACCCTACATATGCGAAGTCTGCGGGGACAGATTTATTcagGGTACGGCGTTGCATAATCACAGACGTACTCATGGACATTTTCCAGAATCAGCATCGGTTACACAGTTACCATCTATAACATACACTGTTCAGCGCTTAAATACtcaagaatga
- Protein Sequence
- MASNSTIGNEIICRTCMGKEGLFSIFEITHDTMTLDLLISSVTGVQIEQGDGLPSTICLNCKEKAITAFDFKRKSQNVDSTLRDLFKKEEIDTNLDEQYDNCDDIKTELHLVDNPDECLDEWAAIDAIVKNENVPHDNSHYECKNCTAVFESFKKYQQHLRKKCVKVEIDDSSNNYCPLCGIYYYDAVSLTKHMWESHTDLMGPKKRGRPRKLMTGAIISKLTENGFHLKSEETKKYSCTFCDEEFKTKEDIHTHQKEHTDKLSFCLFCKKTYLDKNYFDSHVCIINRNSQKGDQDPDEEKSKQDFMSEITFQELLGPYDSEENDCILTVCPVCTGVFRSEDALAVHTDTEHPELSLRCNLCSKMFATVKSASRHRNICKQIERKFRCSTCGLKFAYELSLNKHILRYHEGESVSVTFIDGKSKETRKYQCDDCDKFFDRKQALVRHSKIHSDKLHECEVCKKKFNRSDNLRSHKRIHEPRDKSKVTTCLCLYCGRSFNNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICGVCGKGFSRSNKLSRHMRVHTGVKPYKCTYCGKAFSQSNDLTLHVRRHTGDKPYICEVCGDRFIQGTALHNHRRTHGHFPESASVTQLPSITYTVQRLNTQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -