Atra003646.2
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063552.1:9155700-9164111[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0049 0.33 12.1 1.0 3 23 273 294 272 294 0.96 2 23 0.045 3 9.1 0.6 1 22 673 694 673 694 0.95 3 23 6.8 4.5e+02 2.2 0.3 1 22 736 757 736 759 0.82 4 23 0.052 3.5 8.9 2.1 3 21 770 788 768 789 0.94 5 23 0.35 23 6.3 0.2 2 23 797 819 796 819 0.89 6 23 0.0061 0.41 11.8 0.1 3 23 841 862 839 862 0.96 7 23 0.0025 0.16 13.1 3.9 1 23 868 891 868 891 0.94 8 23 0.13 8.5 7.7 0.0 1 23 913 936 913 936 0.90 9 23 0.019 1.3 10.3 3.4 1 23 941 963 941 963 0.97 10 23 0.0065 0.43 11.7 0.2 1 23 969 992 969 992 0.95 11 23 0.0024 0.16 13.1 1.3 1 23 1008 1030 1008 1030 0.97 12 23 0.00018 0.012 16.6 1.8 1 23 1078 1101 1078 1101 0.97 13 23 0.0041 0.27 12.4 2.4 1 23 1163 1186 1163 1186 0.96 14 23 0.0012 0.082 14.0 2.3 2 23 1212 1234 1211 1234 0.95 15 23 0.088 5.9 8.2 0.1 2 23 1240 1262 1239 1262 0.93 16 23 0.01 0.67 11.1 0.4 1 21 1307 1327 1307 1332 0.93 17 23 0.0012 0.083 14.0 0.6 1 23 1338 1360 1338 1360 0.93 18 23 8.2e-05 0.0055 17.7 0.3 2 23 1452 1474 1452 1474 0.93 19 23 1.8e-07 1.2e-05 26.1 1.1 3 23 1481 1501 1480 1501 0.98 20 23 0.016 1.1 10.5 0.1 3 23 1520 1541 1518 1541 0.94 21 23 0.93 62 5.0 0.1 1 23 1563 1585 1563 1585 0.97 22 23 0.013 0.85 10.8 0.5 1 23 1591 1614 1591 1614 0.96 23 23 0.00019 0.013 16.6 0.8 1 23 1622 1645 1622 1645 0.97
Sequence Information
- Coding Sequence
- ATGGATGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCCCGAAGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGATCCTCCCGTCCTCGCAAGGAAAATCAAGGATTGCGTCTCTGTGCAGataagCGAAAATGACGACCTTCCTACTAATGTCTGCAGAAAGTGTATGGATAATGTGAATAACTGGCATATATTTAAGTCAGTTTGTGAAAGGACTCAAAACAAATTAGAGTCTCTGATAAAAAAAGATGGCAACCAACTAGAAGAGGTTAAAATCAAAAGTGAACCACTCTCTGATGAAGCATATGATGATGGAGTTGTTATTGATGGATCATACCCTGATGAAGAGaGTGCAGGAGGATCTAATAAAATTCAACCAGAAGGCCCACCAATCTTGGCCTCATTGGGGCTCACACCAAGAAGTGATAAGAAATATGTAGATCCTCGAATGGACTGGGCTCGGGTACATGCAATCTTGGATTTAGTACAAGAGGACAATGTTATAGATTCCTTGCAGTACACAGAAGAGAGTGACATTTTAAATCACTCAGATCACGATTCTGACTCTGAGATTGAATTAAAATCTGACATTCCCgatatttatattgattgcaAATCAGGATATGGAATGGACAGTGaaaaggaggaagaagaagaagacgaaGAGATAAATGATCCAGGTCAGTCGTTCATCTCAAATGTGCCCTCTATGCCCGAGGTTTCTATCACAGTGATGCGGCCTTCCGGCGAGACATTACACGCTCGACAAGGTATTCAGGCCCTAGCCTCCAAGGACTGCCTCGTCTGTGGCCGCTCATACAGATACTCCCATAACGCCAGGCGGCACGAACTCACGGCTCATAGTTTCGATAGGTACACAAACAAAGTATCACACAAAAAGTCTTTCGCACACATGCAACCTAAACTAAGACCAAACCCGTTTAATCCAAAGGCACGACTAATGCCGAATCACAAAATGCATCTTATGCCTACACCTGTCCCGAAGTTGATGCAGCATAAAATTGTCAACCCACCGCAACCAGTTCTAATTAAAAAAGGACCACAGAACAATTTACCATATCCACTTCGCATTAAGGCGTTGAaggatttacaaataaagaaaaaagaaccaCAGATGCTGAAAACTTTACTTACATCAAAACCAGAGGTCTTGACTTCCGAAATTGATATAGCAAACTCGGAACCAGAAAGTCCTGAAACTTTGGTATCTGAACCTGAAATAGCTTCTTTCCAAGTAGAGGCTATACTATCTGAACCTGACGCTTTTGATCAACCTCAAGAAGGTGAAGAAGATGGTGATGGGGAAGGAAATAATCAAAGCCAGAATTATGATACTGTTGATATGGATTCtgaaaatgaaattgagattgcTCGCCAGCAAGAGAATGAGGCGGAAGACGATGATCAAAATGGTGATCACGACAATGATGATAACATGCAACAAGACGATGAGAATAATGAAGAACTGGCTCATAGTGGAACAGTGAAAGAACAATTTGAAGAGAATGGTGAACATATGGAAAATgtagaaaaagaagaaaatgttgaTGAGAAACTCGAAGGTGATATTGAGACCAAAGAGGAGGGAGAGGACGACAATGAAAATGAAGAACATGAGGTTAACCATGATGAAAATGATgaatatgatgatgatatgcCTCCTATGGCTTTAGCACCTGTTGTTGAAATAAATGAGGATATGCAAACAAATTCATTCAATAGTGAGATGAATGAGGAAGAAGAACTGGATGAGACAGCCGACGATACTGCCGATCACAATGAAACCGGAGAACAAGTCAAAGAGTTAGATCCCGATAAATTGTATGTAACGAAAACCCAACGGgatttcattttgaaatatagAGACATAATTCAacaaataaatacgaaagtgTGTCTCTGCTGTGACCGGGAACACCCGCGTCGCAAAGCTGTCATTCAACATTTGCAGAAAAATGGACACAAGGTCCCAAAGCACACATGTTATAATTGTGTGGTAACTTTTTCACATATTGGTGCCCTTCTAAGTCACATGAGGTCCAACACTTGCACAGATTTGTGGAAGATTATTTACAATGAAAATGGCATCACTGATGACTTGGTTGTAGATGACGAACCTAAGGAAACAAAAGTTCCATACAAGGACATTTTCAATGCAAGGTCTTATGCTTGCAAGTTGTGCCCAGCTAAATTCCAACTTAAGCAGTTTATTATGAAACATGTATTAGACGTTCACGAAGATGGACAATCTAGAGTTCCAATGCATTGTGTACATTGTGGTTCtcgttttaaagaaaaaagtttaaTCAAGAAACACATACGAAACGGAGATTGCACCGTTTACATATCTTGTGATTTATGTTCAGAAAAGTTTTCCAACATGCAAAAATTCAATGATCATGCACTCGCTGTCCATGCAGGAAGTTTTGACCAGTCCACTGACAACCAGAGCAAATGCGTCGATGGACGACCCACTGATTGTCCTATTTGTGGGAAAAAGAATAGTAGTTACCCAAATCTGGTAAagcatttgaaaataattcacaATGAAGAAAAGCCCCATCATTGCAAACATTGCGACCTTAAATTCGAGCAAGCTGCTGATCTCAATCAGCATATTTATTCAGTTCATTCTGACAGGGGTATGACCGAACCCGATATGTCACTTGTTAAGGAGGAAGCTGAAGAATATCATTATTCTTGCACTGAGTGTAACGCTATATTTGAGACTGTCGACGCGTGGACTGATCATCAAGTGGCCGAACACAACCAGGTGGCGCACCACTGCGACCAATGTGAGAAAAAGTTCCTACGACCGTCAGAACTTGCCGAACATAAAAATACTCATTTGCGTGTGAAATTCTATCCGTGTAACATATGTAGTAATTCTTACAGTACTCCACAAAAACTGTCAGAGCACGTACAACAAGCTCATCCGGGCGTCGGCCCTGGAGCAGCGTTACAGGCCCTGGAGTCCGAATTCTTCTGCGATATTTGTATTAGATCGTTCAAGAGTCGCCAAGCTTACTCTAACCATATGCGTATACACGCCAAAGTTCCCACGACGAACAGGAAGCCTGGGGATCCTAAAGGATTCTCCCCGCAAATTATTGGTAAACCCATAAAACAATTCCCTGCTATTCAAGCTAACTTCTTGTATAAGCCAAATTGTAATGTTCCTAACGCCCCTTACTCGTGCGATATTTGTGGGAAAGGATTTAtgcataagaaaaatatatggaaGCATAAAAAGGTGTTACATGCGGAtatacttaatgatagaaatgacaGTGAAGAAAATACAATGCAAGCAGCGTCAACCGAGGAAGATGATTACAATGTAGACGAAAATGGAGCAATTTTGTCTACACCGCAGTTTAATAGTTTTAACTTTGCCAATTTCACTAACAATGTTCAACAACCGGCGCAGGAGGACCCTATGCCTTATTCCTGCGAACTGTGCTTTAAACGATTTCCGCTTCGATCAAGTTTATACAAACACAAACGTGCTAAACATGGAATTGTTAATGCTAGTGCTGGTGCTGAAACTATGACACCGTCTATTGTTCAGTCTGAGGGAAGCAGCCGGTCCAGTTGCACAATATGTAAAATCACATTCACCGACAAAAAGTCGTATTATCGTCATAGAAAAAATGTGCACAAGACCGCAACGCAAATGTGTAAAATATGTGGCAAACCATTAAATTCCACATTAGAACTCTATGAGCATCTGAAAGCTGCTCACGCTCGCGAGCTTCTGGGATACAATGCCAGTCAAGGTTCTAGCAGTAAGTCTCAAGAAATGAAACAGGAATTAGAAGTAGATTACGAGAATGATCAAGATTCAATCGACCCTTCGGTAGACTATCAAGCGCGGTATCCCTGCGATACTTGTGGGAAACAATTCGTCGGATTATTGGCATTACAGAACCATCAGTGTATAAATCAGGTTCATTCACAGCCGCAGACTTTCGACTGTGAGATCTGTCACAAGAGTTACACATCGATCGCGGCCTTGAAGAGTCACCGCGGGTGGCACTTGCGTTCTCCTGACGGTAAGGCGGCGGCCAATAACACAGGGTTGTGGATGCCACAGAATAAAGTGACGAATAAGGTCAGTAAACACGAAGTGGTGGACCCAGTTCAGCTAGCGCGAGTCCAACACACGACCACGTCGACGCCCGTTTCTGCCGTCGCTGCAAAGAGAAGGCTGCCGCCAGAAGTAGAAGTGACTGTCGTTAACCCGAACAAGAAATTACGGTCCGATGATTCCTTGGACTTAGAGCAACAGAGTGGCACAATGGAAGACAGATATTGCACAATTTGTGACAAAGAATTCACAAAACGGGCGGCGTATCAACGTCACATGGAGGAGGTTCACATGCCCAACTCTGTATTCTGTCCCGTGTGCGACAAGAGCTTCACAAGGAAGTCTACTCTGATCGTGCACATGAAGAAGCACTATGATGGTGGACAGGGCAGTTCCAGTGGGACGCAGGTGGAGGAGGAGATCGCTTGCGACATCTGCGGCGCTCAGTTCGATAACGAAAACGCATTACAGTCACATAAAGAGCGAAATCACGGCGATGAGGAATCTGAGGAGTCTGAAGACGACGGTAGTGTGCCTTTTCCTCAGCCCGGCGAATTCACGTGCGCCCAATGTGGCGATGGAGTTGCGACGCCCCGCGACTTGTTGTATCACAGGACGATGCACGCGACCCCTACTAAATTCTACTGTAACATTTGCAAAGTGTACTTTGCGAGAGCTCTAGACCTCTCGTCGCATACTCGGGCGCGACACGCCGATAACGAGAAAGTTTTTTTCCCGTGTGCCATGTGTGATCGATTCTACATGAACAAGAAGAGTTTGCAGCGGCACATCGAGACGTCCCATTGA
- Protein Sequence
- MDVNYDRVCRLCLSSRSELLPIFPTTSSDDSDPPVLARKIKDCVSVQISENDDLPTNVCRKCMDNVNNWHIFKSVCERTQNKLESLIKKDGNQLEEVKIKSEPLSDEAYDDGVVIDGSYPDEESAGGSNKIQPEGPPILASLGLTPRSDKKYVDPRMDWARVHAILDLVQEDNVIDSLQYTEESDILNHSDHDSDSEIELKSDIPDIYIDCKSGYGMDSEKEEEEEDEEINDPGQSFISNVPSMPEVSITVMRPSGETLHARQGIQALASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKVSHKKSFAHMQPKLRPNPFNPKARLMPNHKMHLMPTPVPKLMQHKIVNPPQPVLIKKGPQNNLPYPLRIKALKDLQIKKKEPQMLKTLLTSKPEVLTSEIDIANSEPESPETLVSEPEIASFQVEAILSEPDAFDQPQEGEEDGDGEGNNQSQNYDTVDMDSENEIEIARQQENEAEDDDQNGDHDNDDNMQQDDENNEELAHSGTVKEQFEENGEHMENVEKEENVDEKLEGDIETKEEGEDDNENEEHEVNHDENDEYDDDMPPMALAPVVEINEDMQTNSFNSEMNEEEELDETADDTADHNETGEQVKELDPDKLYVTKTQRDFILKYRDIIQQINTKVCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNTCTDLWKIIYNENGITDDLVVDDEPKETKVPYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPMHCVHCGSRFKEKSLIKKHIRNGDCTVYISCDLCSEKFSNMQKFNDHALAVHAGSFDQSTDNQSKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEEKPHHCKHCDLKFEQAADLNQHIYSVHSDRGMTEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQAHPGVGPGAALQALESEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFSPQIIGKPIKQFPAIQANFLYKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNDRNDSEENTMQAASTEEDDYNVDENGAILSTPQFNSFNFANFTNNVQQPAQEDPMPYSCELCFKRFPLRSSLYKHKRAKHGIVNASAGAETMTPSIVQSEGSSRSSCTICKITFTDKKSYYRHRKNVHKTATQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQGSSSKSQEMKQELEVDYENDQDSIDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVHSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQNKVTNKVSKHEVVDPVQLARVQHTTTSTPVSAVAAKRRLPPEVEVTVVNPNKKLRSDDSLDLEQQSGTMEDRYCTICDKEFTKRAAYQRHMEEVHMPNSVFCPVCDKSFTRKSTLIVHMKKHYDGGQGSSSGTQVEEEIACDICGAQFDNENALQSHKERNHGDEESEESEDDGSVPFPQPGEFTCAQCGDGVATPRDLLYHRTMHATPTKFYCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIETSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -