Basic Information

Insect: Amyelois transitella
Gene Symbol: Bcl11a
Assembly: GCA_032362555.1
Location: CM063577.1:502583-507867[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9 6e+02 1.8 0.2 2 18 60 76 60 76 0.91

2 15 7.9e-06 0.00053 20.9 1.6 1 23 192 214 192 214 0.98

3 15 0.0069 0.46 11.6 0.2 1 23 220 243 220 243 0.94

4 15 5.4e-05 0.0036 18.3 0.9 1 23 249 271 249 271 0.98

5 15 0.00018 0.012 16.6 2.3 1 23 276 298 276 298 0.99

6 15 1.9e-05 0.0012 19.7 3.8 1 23 304 326 304 326 0.98

7 15 7.4e-07 5e-05 24.1 1.0 1 23 332 355 332 355 0.96

8 15 1.7e-05 0.0012 19.8 3.0 1 23 361 383 361 383 0.98

9 15 1.8e-05 0.0012 19.8 1.0 1 23 389 411 389 411 0.98

10 15 0.0012 0.082 14.0 1.4 1 23 417 439 417 439 0.99

11 15 2.7e-07 1.8e-05 25.5 0.4 1 23 445 467 445 467 0.97

12 15 2.2e-06 0.00015 22.7 0.9 1 23 473 495 473 495 0.98

13 15 0.29 19 6.5 2.8 1 23 501 520 501 520 0.94

14 15 7.9e-07 5.3e-05 24.0 0.3 1 23 526 548 526 548 0.98

15 15 0.00019 0.013 16.6 6.4 1 23 554 576 554 576 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9	6e+02	1.8	0.2	2	18	60	76	60	76	0.91
2	15	7.9e-06	0.00053	20.9	1.6	1	23	192	214	192	214	0.98
3	15	0.0069	0.46	11.6	0.2	1	23	220	243	220	243	0.94
4	15	5.4e-05	0.0036	18.3	0.9	1	23	249	271	249	271	0.98
5	15	0.00018	0.012	16.6	2.3	1	23	276	298	276	298	0.99
6	15	1.9e-05	0.0012	19.7	3.8	1	23	304	326	304	326	0.98
7	15	7.4e-07	5e-05	24.1	1.0	1	23	332	355	332	355	0.96
8	15	1.7e-05	0.0012	19.8	3.0	1	23	361	383	361	383	0.98
9	15	1.8e-05	0.0012	19.8	1.0	1	23	389	411	389	411	0.98
10	15	0.0012	0.082	14.0	1.4	1	23	417	439	417	439	0.99
11	15	2.7e-07	1.8e-05	25.5	0.4	1	23	445	467	445	467	0.97
12	15	2.2e-06	0.00015	22.7	0.9	1	23	473	495	473	495	0.98
13	15	0.29	19	6.5	2.8	1	23	501	520	501	520	0.94
14	15	7.9e-07	5.3e-05	24.0	0.3	1	23	526	548	526	548	0.98
15	15	0.00019	0.013	16.6	6.4	1	23	554	576	554	576	0.98

Sequence Information

Coding Sequence: ATGTCAGAAATTTGGAATGTGAATTGTTTGTGCCGCTGTTGCCACGCTGAAGGCAGTTTCAACAATTCTTCTGCAATATTTAATGACGAAATTACCGCTGAAACATTTTCAGTCATGCTAAGggaaacatttaatattaacATCACACCTGTACCAAGAGACAGCAAACATATCAACGTCTGTAGCCAATGCGAATTAAGATTACGGGACGCCTCACTCTTCAAACGACAAGTTTTGGATTGCGAACAAAAGTTTAGACAATATTACTCTGAAGAATCCAAAGATGAACATTTGAACAAAGGTGTGAAAATAGAAACAGACGATATCGAAGACGTCAAAGATGAATCGGATCAAATAGAAgccaatgaaaataaatactatgGAGACTCCGGCCAAATCGCTTCAATGAAAATATTCATCAAACCTGTTGTTAATTTGGAAGACCAGCCATTGTCTGTGTTGAAGAGTCATCATGATTGGAGTCCGGACCAGAGCGatgatgaaTATCAGACGCCATTAAATCAACTAGAAACGAAATACACGCACTCagAAAAGCAAAAAAAGACGAAAAAATATTCCTGCGATGTTTGCGAGAAACGTTTCACATACCACGGGTCATTAGAAGTGCACATGAAACTGCACACTGGCgagaaaacatacaaatgtCTACTGTGCAACAGCATATATACTGAGAACAAGGAGTTGACAAAACATATAGCCGCCGCACATAGCGTGAACGACAGATATACGTGCACTGTATGCGAAGAAATATTCGTTAAAGCGTCAACATTCAAAAAGCATATAACGAAACATTTCTTAGAGAAATTCAAGTGCGCGACATGCAACAAAGAGTTTCAGAAGAAGAAGGGTCTCAAGGAGCATGTTAAAACGCATACGGGTGAGAAAAAACACGTTTGCAATGTATGTTCCAAATCTTTTGTGCACAGTCAGACGTTGAAATCGCATATTTTGACCCACACCGGCGAGAAACCTTACGTTTGTGATGTGTGCGGGCGCAGGTTCCCGCAGAGAACTCATTTGAAAcgacacatatatataatacatacaggCGTCAAGCCTTACTCTTGCAAAACTTGCAATAAACAGTTCTCGAGTAAAAGTTACTTATCTATACACGAGAGGCAGCATACAGGCGAGAAACCTTTCTCGTGTGATGTCTGCCAGAAGAATTTCACAGCGTACACCACATTAAAAGTACATATGCGCGTGCACACAGGTTTGAAACCGTATTCGTGCAGTTTCTGCGAGCGCCAGTTCGCGCAAATGGCTAGTTTCAAACTTCACGAGCGAACTCATACCGGTGAGAAACCGTTCGCTTGCAAAGTGTGCAAAAAACCGTTCTCCGATAACGGTTATTTGAAAATTCATATGCGCGTGCACACAGGCGAGAAACCTTACGCGTGCGAAGTTTGCAAAAGGCGTTTTCGCGAAACTGGACAGTTAAAGCGGCATATGAGAGTGCACAGCGGCATAAAACCTTATACGTGTAAAGTATGCAATAAACAAATCGGCAATTTGTCTAAGCATATGAAAGTGCATTCGGACGAAAGGCCGTACAGTTGTGACGTATGTGAGAAACAGTTCTCTGTCAACGGTAATTTGAAACTGCACATGAGAATACACACGGGTGAGAAACCGTTTACCTGTGACATTTGCCACAGCCAATTCACTCAGAGCAGTGGTTTGAAGAGGCATAGATGTACGCATGAGAAAAATTAA
Protein Sequence: MSEIWNVNCLCRCCHAEGSFNNSSAIFNDEITAETFSVMLRETFNINITPVPRDSKHINVCSQCELRLRDASLFKRQVLDCEQKFRQYYSEESKDEHLNKGVKIETDDIEDVKDESDQIEANENKYYGDSGQIASMKIFIKPVVNLEDQPLSVLKSHHDWSPDQSDDEYQTPLNQLETKYTHSEKQKKTKKYSCDVCEKRFTYHGSLEVHMKLHTGEKTYKCLLCNSIYTENKELTKHIAAAHSVNDRYTCTVCEEIFVKASTFKKHITKHFLEKFKCATCNKEFQKKKGLKEHVKTHTGEKKHVCNVCSKSFVHSQTLKSHILTHTGEKPYVCDVCGRRFPQRTHLKRHIYIIHTGVKPYSCKTCNKQFSSKSYLSIHERQHTGEKPFSCDVCQKNFTAYTTLKVHMRVHTGLKPYSCSFCERQFAQMASFKLHERTHTGEKPFACKVCKKPFSDNGYLKIHMRVHTGEKPYACEVCKRRFRETGQLKRHMRVHSGIKPYTCKVCNKQIGNLSKHMKVHSDERPYSCDVCEKQFSVNGNLKLHMRIHTGEKPFTCDICHSQFTQSSGLKRHRCTHEKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -