Atra019272.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063575.1:4454816-4457086[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.8e-06 0.00018 22.3 3.9 1 23 6 29 6 29 0.95 2 21 0.0034 0.23 12.6 1.5 2 23 35 57 34 57 0.94 3 21 3.1e-05 0.0021 19.0 0.3 2 23 66 88 66 88 0.97 4 21 2.1e-06 0.00014 22.7 1.2 2 23 97 119 96 119 0.96 5 21 6.6e-05 0.0044 18.0 2.0 2 23 125 146 124 146 0.97 6 21 7.5e-06 0.0005 21.0 0.3 2 23 152 174 151 174 0.95 7 21 8e-07 5.3e-05 24.0 1.9 1 23 180 203 180 203 0.98 8 21 0.024 1.6 9.9 0.6 1 23 211 234 211 234 0.95 9 21 0.00029 0.019 16.0 1.5 2 23 245 267 245 267 0.97 10 21 0.00073 0.048 14.7 1.4 2 23 294 316 293 316 0.96 11 21 0.43 28 6.0 0.4 2 22 324 344 323 344 0.94 12 21 0.0046 0.31 12.2 1.5 2 23 353 375 353 375 0.96 13 21 0.0059 0.39 11.9 3.2 1 23 397 420 397 420 0.96 14 21 0.0043 0.28 12.3 0.5 2 23 427 449 426 449 0.89 15 21 8.8e-05 0.0059 17.6 3.1 2 23 456 478 455 478 0.96 16 21 0.015 0.98 10.6 2.1 1 23 484 507 484 507 0.97 17 21 0.15 10 7.4 6.9 2 23 515 537 514 537 0.95 18 21 4.7e-05 0.0031 18.5 0.1 1 23 544 567 544 567 0.97 19 21 0.27 18 6.7 1.7 1 20 574 593 574 595 0.92 20 21 0.0011 0.075 14.1 1.5 2 23 607 629 607 629 0.95 21 21 0.44 29 6.0 3.6 1 18 679 695 679 701 0.76
Sequence Information
- Coding Sequence
- ATGAACAGCTCTGACTACGTTTGTGACTATTGCAGCAGATCATTCACCAGGAAATACAATCTTCAAACTCACATTGAAAATTGTCACCTGAACTCGTCCTGCTATTGTGAAATATGCCACCTTACATTCGGCAGCCCGTCCGGTTTGAGCCTGCATTTGTACCGTGGCCATAACAGATTCAGCCAACCGTACCCCGAATGCGATTTATGCGGGCGTATCTTCacgagaaaacaaaatattgtatcaCACATGATGACTGTACATTTACAAGGCTTAGGAGCTGAAATAAAATGCCAGTTCTGCCAAAAAGTATTCACAACGGAACGTAATTTGAAGAGGCATATAAATGTTCTGCACAATTCCACATCGATTAGCTGTGGTATATGCCACAAAGTTTTCAGAGAACGCAAGAGGCTGAATGAACATATGAACACTCATTACGTTAAGAGTGTGCAGTGTAGCTTGTGCGATAAGGCGTATACTAGCAACGCGAACTTGAAGAGGCATGTGGAAATGTATCACGGGGAGAAAGAGGAATTCCGCTGCAACATGTGCCCTAAGATTTACACTTCAAATCAGAGCCTGAGAAGGCACATCAGAACGCGACACCAATCTGAGAGCAATGACGCGTACGCATGTGATTTTTGTGAATTCAGCGCGATAGGCAAAGACAATCTTAACGCACACATGTCCAACTGTCACAACGATGCGCACGAGTCTGAAAATATCAACGTTTGTCAAACTTGCGGCTGCACGTTTGATACAGAATCAGTTTTGCGGCAACACATCAAAACGGAACATCCATTTGACGTTTTCTACAAATATTGCAGAGAGTCCTTACTGAAGGACGTGGGCAAGCGTCACAagcaagtttttttaaattgtgaataTTGTGACAATAATTATAACAACATATACGAGTTGAAACACCATTTGAGAACAGTACATGATAAAGAATACAGTCTCACCACTTGCAATGTGTGTTTTGGCAAGTTTTACACGCAAGAAACAATAAACGCGCACAGACAGACCTGCATTCCGCCGCCGAACGTGAACTCTTGTTCGCATTGCGATAAATTATTCACCGACATATCCAGTTTGGAGTTTCATATAAGGATTTTCCATCCGCAAGCACAAATCGCCGATTCGAATATTACATCCACGAAAGATGACGCCCTGGAAGGCAATTACAAATGCGATCAATGCGAAAGAGTGTATTACAGTGACAGGTCATTGAAACACCACGTTAAATTGAGACACTCGACGGGGGAGGCGGTGGAGTGTGATATATGCTCGAaagtgtttaataataaatattatctcgCGTTCCACAAGAAGAACGTGCATAGCCATGTCGCGTGGTCCAAATGTGACTATTGCGACAAACAGTTCAAATCGAAGCGTTATATTCGACGGCACATAAAATATACTCATTTAGGAATGCAAAGATATAAATGTATTGAATGCGAGACACtgtttaaagagaaaaaaagtCTGCGCAAACATGTCAGATCTAAGCATCCGAATTCAACGGCGTTCCAACAGTGTCACATTTGCCACAAGAGATTCGAATCTGCCAAATCGTGTAAGATACATTTGAAATTGCTTCATTCGTTCAATATGAACACGTTCCCTTGCGATTTGTGCCCCGTGTCGTTCAGTTCGAATGAAGCGCTAGCGATTCACCTGAAAACGAAACATTTGTCCGAAGACAAAATATTCAAATGCAAGAATTGCAATTCCGTTTTCAAAGGGCAAGAGAAGTTTGACAGCCACAAAGAGTATTGTCAATATTTGCCCAATACAAAAGTTTTGCCGCGCTGTGTTTTATGCGCGAAGGATTTCAGCACAAAAGAAACTTTGAAGCGGCACGTGAAGAATTTTCACACGGAATTCGACGCCGACGACCTAGCCAATTATGGTTTGGAAAATGGAGTTTTAACAGTGGATTGTGAGAATTGCGTCAGGAATCTCCAAGACGAGTTTCACTACGAAATTTACCAACGTTACAAGGATAATAAAGAcgcgtttatttttaaatgtgagaTGTGTAAGTGTTCTTTCAACTCGTTAGATTATTTGGTGCACAGATACAAGTTGCATTTTGAAAGTTCACAAGGCAAGATGATTCTCAGTGAGCTTTGCACGACTCAGATgagtgatgatgatgaatttGGAGGTTTCGGATCATTGCACGATCATATGGAAGCGGAGAGCACGACTGATAATTTAGAtttagatgttgtaaaaagcgaacCTGTGTCTCCTTAG
- Protein Sequence
- MNSSDYVCDYCSRSFTRKYNLQTHIENCHLNSSCYCEICHLTFGSPSGLSLHLYRGHNRFSQPYPECDLCGRIFTRKQNIVSHMMTVHLQGLGAEIKCQFCQKVFTTERNLKRHINVLHNSTSISCGICHKVFRERKRLNEHMNTHYVKSVQCSLCDKAYTSNANLKRHVEMYHGEKEEFRCNMCPKIYTSNQSLRRHIRTRHQSESNDAYACDFCEFSAIGKDNLNAHMSNCHNDAHESENINVCQTCGCTFDTESVLRQHIKTEHPFDVFYKYCRESLLKDVGKRHKQVFLNCEYCDNNYNNIYELKHHLRTVHDKEYSLTTCNVCFGKFYTQETINAHRQTCIPPPNVNSCSHCDKLFTDISSLEFHIRIFHPQAQIADSNITSTKDDALEGNYKCDQCERVYYSDRSLKHHVKLRHSTGEAVECDICSKVFNNKYYLAFHKKNVHSHVAWSKCDYCDKQFKSKRYIRRHIKYTHLGMQRYKCIECETLFKEKKSLRKHVRSKHPNSTAFQQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCDLCPVSFSSNEALAIHLKTKHLSEDKIFKCKNCNSVFKGQEKFDSHKEYCQYLPNTKVLPRCVLCAKDFSTKETLKRHVKNFHTEFDADDLANYGLENGVLTVDCENCVRNLQDEFHYEIYQRYKDNKDAFIFKCEMCKCSFNSLDYLVHRYKLHFESSQGKMILSELCTTQMSDDDEFGGFGSLHDHMEAESTTDNLDLDVVKSEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146636;
- 90% Identity
- -
- 80% Identity
- -