Atra019240.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amyelois transitella
Gene Symbol
ZIPIC
Assembly
GCA_032362555.1
Location
CM063575.1:4115130-4131541[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.016 1.1 10.5 1.0 3 23 271 291 270 291 0.95
2 23 7.9e-05 0.0053 17.8 0.7 1 23 294 316 294 316 0.96
3 23 1.4e-06 9.4e-05 23.3 5.3 1 23 322 344 322 344 0.99
4 23 1.6e-07 1.1e-05 26.2 2.1 1 23 350 372 350 372 0.99
5 23 2.2e-06 0.00015 22.7 2.4 1 23 378 400 378 400 0.99
6 23 3.9e-05 0.0026 18.7 0.7 1 23 416 438 416 438 0.98
7 23 0.00037 0.024 15.7 3.5 1 23 459 481 459 481 0.99
8 23 0.00031 0.02 15.9 6.3 1 23 487 509 487 509 0.99
9 23 0.00037 0.024 15.7 2.0 2 23 514 535 513 535 0.97
10 23 3.4e-05 0.0022 18.9 0.4 1 23 559 581 559 581 0.99
11 23 0.00012 0.0082 17.2 6.5 1 23 587 609 587 609 0.98
12 23 0.0014 0.093 13.8 1.8 1 23 615 637 615 637 0.98
13 23 7.7e-06 0.00051 20.9 1.8 1 23 661 683 661 683 0.98
14 23 0.26 18 6.7 7.5 1 23 689 711 689 711 0.94
15 23 3.7e-06 0.00025 21.9 0.3 2 23 718 739 717 739 0.97
16 23 2e-05 0.0013 19.7 5.9 1 23 751 773 751 773 0.95
17 23 0.012 0.78 10.9 1.8 1 23 779 802 779 802 0.98
18 23 1.3e-05 0.00085 20.2 0.9 1 23 808 830 808 830 0.98
19 23 0.94 63 4.9 2.7 2 23 847 867 846 867 0.94
20 23 5e-08 3.3e-06 27.8 0.9 1 23 873 895 873 895 0.99
21 23 0.00053 0.036 15.2 2.5 1 23 901 923 901 923 0.98
22 23 0.0012 0.083 14.0 2.4 1 23 929 951 929 951 0.97
23 23 0.09 6 8.1 3.7 1 23 957 979 957 979 0.98

Sequence Information

Coding Sequence
ATGCCTCAAACGTCGATATGTCGTTTGTGTCTTTGCACAGACGTTCGCATGTTTACTATAGCCGGTACCCCCTTGCAAGCAGTGTATGAGAAAATTACGGATTCTGAGTTGCTGGACAATATGAAGCCGGTCGCCGCCTGTTACATCTGCCACGCTCACCTTCGGAGGTGCCGTTCTTTCATGGAGAAGTCAGTCAGGGCGGACGAGGTTCTAACCGGATTTCTGATGAACAATAAGCTCACAGTAAAAACAGTGGCCCGAATTGACCGTAAGTCTCACAATCTGGTTCACTCGCTGTCCATCAAGAAGATGTCTTCCGAAGACCACCTGGAGGTGGAAGAGAGTAAGGTGAAGACCGAAGTGGAATTCGAATTTGCCGGTGCCGAAGACGTGAACGATATGAGCTACGAAGATCATAGTGATTTTCCTGCGTTCAACGATACCGAGGTTCAATTAGACGAGAAAGCGTTTGTACTGCGGCCGGAGAATGAATATTTGGAAAACgttgaatatttaaaagagGAGAAACAACTTATAgCGTCGGACGCGGACGAAAATCGCAACGCGGATTCGGACGACGAGCGACCGTTGAACACTTTGAAGAGTAATTTGAAATGTCGGTCGGACGACTCCGATCGCACGACTACCAAACGTACGGTAGCGTCAGTGAAAAAAACGCTCAAAAAGGCGACGGTGAAAAAATCTCAACAAAAGGAGAAGAAACGCATCAAACTCATAAAGAGACCAACGCCCGCCGACCAAGAGAAAGTACAGGAAATACGTAATATAATATTCAAAAGGCGACGCTCGTGTCGCGTATGTCAAATGAAATTCGCAACGGAGGTCGAATTACAACACCATCGGATAGAGCATAGGCCTTATGCGTGTCAGATATGCCAAAAGCGGTTCCGAACGAATCCCCTTCTAAAGCAGCATTTTATTATACACAGCGGCGAGAAACGGTATCAATGTTACGAATGCGGAACACAATTCAGTCGCCCGCACCATTTGAGGAACCATTTGAGAACGCACTCCGGCGAAGTGCCGTACGAGTGTAATGTGTGCAATCGCAGATTCAACAACTCGAGTAATCTCAGACAGCACATAAAAAGGCACACGGGCGAGAAACCTTATCAGTGTGACGTGTGCCAGCGTAAATTCGCGCAGAAGAACACGTTGCAGAAGCATTTGAAAACGCACGGTCCGGGCAGGTGCAATGATTTGCAGAGAACCAGGGAGAAACCGTACAAATGTGTGGAGTGTGGCGCTGGATTTGTGAGAATTTATCACTTGAAAAGACATTTGACTATACATTCTGATGGCGTACTTCCGATCGAAGGGGCAAaacgaattaaaataaacaaccgTAGCGGCTACAAATGTCGGGTTTGTCGCAAAACATATGTAAACAAGGGTCACATGCGCGAACATCTTAACAGTCACACAGGTGAAAAACCTTTTAAGTGCACGCAATGCTCGGCATGTTTTGGCCGCGTATATCATTTGAGGAGGCATATCAAGACACATGTGAGACCACTTAAATGTAATCAATGCGCCCGTAGATTCACACGCATTGATAAATTGAAATTGCATCTTAAAACACACGATGGAGTTTCTGATGAAATTGTAAAGATAGATTCTGATTATAAAAGTGTATGTGATGAACTGAAACCGTACGTTTGCCAAGAATGCGACGCTGCGTTCAAACGATTCAAAGAACTAGATAATCATATAAAAACACACACGGGCGAATTGTTTTTCGAATGTGACCATTGTCAGCGCACGTTTGATCGAAAATGTAATTTGATTTATCATATTAAGAGGCATATCGAGAATGCGAaacataaatgtgaaatttgtagagttaaattttctaaaaaagcCTTGTTGGATGAACATTTGAAAATGCACGCTGCTGAAATAATTTCAGATAGAGACGGTGTCAGCAAAATTGATTTGGACGACAATTTTGATAAGCCTTACCAATGCAACAAGTGCGGTGCAAGGTTCTCGACTAATTATCGTTTGAAAAGGCATTTGTTGCTACACAGAGACGATGCGACGCACGAGTGCATCTATTGTCATTGTAAATTTACTAATATAGTTAGTCTTAgaacacatctgagaaaacaCACTGGCGAAGTTGTCGATAGATGTAAAATTTGTGGGCGCGCTTTTGCCGAGAAAGAAAAGTTGGAGGCTCACATGAAAAAACACGTTGATggcaaaataaaaatggaatcaAAACCCTTCCTTTGCTATCATTGCGGGGTTCGATTCACGAGGCGTTATCATTTAAACAGACATATACAAACGCATACCAAGAAAATCGTTTACAAATGTGAACACTGTCcatcaaaatttattgataaaagaaTTTTGTCTATGCACATTAGGAAAGAACACGCTTCAGAAATAGAATACGCGTGCGAAATTTGTCAGCAAAGATTTAAGAAAAAGTATGGTTTGAACAGGCATTTGGCGACGcatgagaaaaataaagaacgtAAAATCAAAGCGGTTGAAAATGCGTCGGATGTTTGTAATGTGTGTGGAATTGAAGTCAAACGTTGCCATTACAAGCAACATATGATAAGACACACAGGAGAGAAACCTTACGAATGTAATCTCTGTGGCAAGAGGTTCACTCAGAGTGGTTCTTTGAAAGCACACCTGCGCAGGCACACTGGCATTAAACGATTTCAATGCGACGTGTGCCAACAtggattttatgaaaaaaataatctgaTCACACACATGACTAAGCATTCTGATGAGAAACCACACGAATGTGATGTCTGCAATCGAAAATTTAAGCGGAAAGATGTTATGATTATGCATAGGAAAATACATTCGAATGAGAAACCTCATCAGTGCAATGTTTGTATGCGAAAGTTTGCGCTGAGGAAAACTATGATGAAACATTTGAACACGCACAAGGTTGACAAACTGGTGGGAGTATAA
Protein Sequence
MPQTSICRLCLCTDVRMFTIAGTPLQAVYEKITDSELLDNMKPVAACYICHAHLRRCRSFMEKSVRADEVLTGFLMNNKLTVKTVARIDRKSHNLVHSLSIKKMSSEDHLEVEESKVKTEVEFEFAGAEDVNDMSYEDHSDFPAFNDTEVQLDEKAFVLRPENEYLENVEYLKEEKQLIASDADENRNADSDDERPLNTLKSNLKCRSDDSDRTTTKRTVASVKKTLKKATVKKSQQKEKKRIKLIKRPTPADQEKVQEIRNIIFKRRRSCRVCQMKFATEVELQHHRIEHRPYACQICQKRFRTNPLLKQHFIIHSGEKRYQCYECGTQFSRPHHLRNHLRTHSGEVPYECNVCNRRFNNSSNLRQHIKRHTGEKPYQCDVCQRKFAQKNTLQKHLKTHGPGRCNDLQRTREKPYKCVECGAGFVRIYHLKRHLTIHSDGVLPIEGAKRIKINNRSGYKCRVCRKTYVNKGHMREHLNSHTGEKPFKCTQCSACFGRVYHLRRHIKTHVRPLKCNQCARRFTRIDKLKLHLKTHDGVSDEIVKIDSDYKSVCDELKPYVCQECDAAFKRFKELDNHIKTHTGELFFECDHCQRTFDRKCNLIYHIKRHIENAKHKCEICRVKFSKKALLDEHLKMHAAEIISDRDGVSKIDLDDNFDKPYQCNKCGARFSTNYRLKRHLLLHRDDATHECIYCHCKFTNIVSLRTHLRKHTGEVVDRCKICGRAFAEKEKLEAHMKKHVDGKIKMESKPFLCYHCGVRFTRRYHLNRHIQTHTKKIVYKCEHCPSKFIDKRILSMHIRKEHASEIEYACEICQQRFKKKYGLNRHLATHEKNKERKIKAVENASDVCNVCGIEVKRCHYKQHMIRHTGEKPYECNLCGKRFTQSGSLKAHLRRHTGIKRFQCDVCQHGFYEKNNLITHMTKHSDEKPHECDVCNRKFKRKDVMIMHRKIHSNEKPHQCNVCMRKFALRKTMMKHLNTHKVDKLVGV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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