Atra019243.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amyelois transitella
Gene Symbol
-
Assembly
GCA_032362555.1
Location
CM063575.1:4163192-4165781[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 3.1e-06 0.00021 22.2 0.7 1 23 11 33 11 33 0.98
2 22 3.2e-06 0.00021 22.1 1.3 1 23 39 61 39 61 0.98
3 22 0.00069 0.046 14.8 8.9 1 23 67 89 67 89 0.98
4 22 0.00025 0.017 16.2 4.5 1 23 95 117 95 117 0.99
5 22 8.8e-05 0.0058 17.6 0.3 3 23 125 145 124 145 0.98
6 22 0.0002 0.014 16.5 1.1 1 23 151 173 151 173 0.99
7 22 1.9e-05 0.0013 19.7 1.6 1 23 179 201 179 201 0.99
8 22 5.9e-05 0.0039 18.2 3.1 1 23 207 229 207 229 0.97
9 22 1.8e-06 0.00012 22.9 4.8 1 23 235 257 235 257 0.98
10 22 0.00027 0.018 16.1 4.6 1 23 263 285 263 285 0.99
11 22 0.0015 0.099 13.8 3.3 1 23 291 313 291 313 0.98
12 22 0.00055 0.037 15.1 0.6 2 23 316 337 315 337 0.97
13 22 0.62 42 5.5 0.9 1 23 378 400 378 400 0.95
14 22 7.1e-06 0.00048 21.0 1.9 1 23 403 425 403 425 0.98
15 22 0.00051 0.034 15.2 2.4 1 23 431 453 431 453 0.98
16 22 0.00064 0.043 14.9 5.8 1 23 459 481 459 481 0.98
17 22 0.00015 0.0099 16.9 3.5 1 23 487 509 487 509 0.99
18 22 5.4e-05 0.0036 18.3 0.2 1 23 515 537 515 537 0.98
19 22 0.00067 0.045 14.8 0.6 1 23 543 565 543 565 0.98
20 22 2.5e-06 0.00017 22.5 1.2 1 23 569 591 569 591 0.99
21 22 0.00023 0.016 16.3 2.8 1 23 597 619 597 619 0.97
22 22 1.9e-05 0.0012 19.7 1.8 1 23 633 655 633 655 0.98

Sequence Information

Coding Sequence
ATGCGGAAACATTTGAAAGAGCACAAACCTTTTGAGTGTGCCGTGTGCAACAAGAGGTTTGATAGGAGAACCAATTTGCAACAGCATGTCATAACCCACACTGGTGTTAAGGCATACGAATGCGACGTCTGTCATCGTAGATTTAGTCAAAAGGGCACATTGAAAATTCACCAAGCCATACACACTGGGGAGAGACCGTTTGAATGTCACGTGTGTCatcacaaatttaataaaaaaggcaATCTGACGAAACATTTGACTAGGCACACTGGAGAAAAACCATACGAGTGTGACATTTGCCATCGTAGATTTAGGGAGAAACACCCATTCACCGTACATTTGAGGATGCACACTGGCGAGAAGTCGCTTCTCTGCAATATTTGCGGCAAAACGTTCGGCGCTAACAAAGATCTGAAAATACATTTGCTAAAGCACTCCGGCGCGGAGTTGTATAAATGTGATATTTGTCAACGCACCTTTGCCATAAAGTCCACTTTCGACTTGCACGTAAAAACGCATACTAATGGTAAACCGTTTCAATGTACTATATGTCAACGTGGGTTTAATATTAAGCAGCATTTGGAGGCCCACGTGAGGACGCACACAGGCGAAAAGCCATTTGAATGTAGCATTTGTAATTACAGGTGTTCTAGCAAAGGTAATTTGACTCAACACCAAGTAAAGCACACAGGCATAAAACCTTTCGAGTGTAACATCTGTCATCTTCGATTCACACAGAAAAGTAATTTGAAGAAACATTTAACGAGGCACACGGGTGAGAAACCGTTCGAATGTGATGTGTGTCATCGTAGGTTTCGAGAGAAACATCCATTCATTCTTCATATGAGAACGCACACTGGCGAGAAACCATTCCAGTGTAACTTCTGTTATTTGAGATTCAGTGCTAATAACCAATTGAAGAGGCATTTGACCAAACACACGGACGAGTGCGACGTGTGTCAAAGTAGGTTTGTTTCGAAAAAAACGCTGGAGTTACATCTTAAAACACACAGTGTGGGCAATGATCCACCGACTGACCAAGTGCCGAACACTGAACTTCTAGAAGAAACTACAACAGCCAATAAACGAATTAAGTCTTTACAATTCGTAAAAAGCGAAAACCGGTTATATTACTTGTGTCAGTTTTGTCAAAAAGTTATATTTGGGGAGAAAGAAATGCGAAAACATTTGAAAGAACACAAACCGTTCGAATGCGTCGTCTGTCATAAGAGATTTAGCGCTAAATCAGAGTTACGTAGACATGTCAAAATTCATACTGGCGAACGGCCTCATAAATGCAATATGTGCGGCGCGAAGTTTGCTAAAACGAGCGGGTTGAAAACCCATTTTAAAATACACACAGGAGAAAAACCATTCGAGTGTAATATCTGTCATCACAAGTTTAATCTCAAATGGAATTTGACGAAACATCTGACAAGACATACAGGCGAGAAACCGTATGAATGTGAGATATGTCACCGTAGATTCAGAGAGAAATTCccttttaaaatacatttacgaACACACACCGGCGAGAAACCTTTCCAGTGCAATATTTGCGGCGTCAGATACAGCGCGAATACGGAATTGAATGTACATTTGATGAGGCATAGTGGTGAAACACCGTACCAATGTCAAGTTTGTCAACGTAGATTTCCCGTGAAACGAGCTCTGTATTGGCATTCGAAAATACACGACAAATCATACGAATGTTCTATATGTCAGCGTCGGTTTTCTGTTAATCAAAAATTACAGTCGCATATGAGAATTCATACCGGCGAAAAGCCACACGAATGTAATGTGTGCAAACGTAGTTTTTCTGTTAAAAAGTCTCTAGATTTACATTTGAAGAGCCACGAATGCGTTAGTGACGAACTAGGCAATTTAAATAAGCCGTTTGAATGTGATGTGTGTCAATTAAGGTTTTCCAAGAAGAAAACTTTACAAATACATCTCAAGACGCACATACAAATTAGTCTAAATTAG
Protein Sequence
MRKHLKEHKPFECAVCNKRFDRRTNLQQHVITHTGVKAYECDVCHRRFSQKGTLKIHQAIHTGERPFECHVCHHKFNKKGNLTKHLTRHTGEKPYECDICHRRFREKHPFTVHLRMHTGEKSLLCNICGKTFGANKDLKIHLLKHSGAELYKCDICQRTFAIKSTFDLHVKTHTNGKPFQCTICQRGFNIKQHLEAHVRTHTGEKPFECSICNYRCSSKGNLTQHQVKHTGIKPFECNICHLRFTQKSNLKKHLTRHTGEKPFECDVCHRRFREKHPFILHMRTHTGEKPFQCNFCYLRFSANNQLKRHLTKHTDECDVCQSRFVSKKTLELHLKTHSVGNDPPTDQVPNTELLEETTTANKRIKSLQFVKSENRLYYLCQFCQKVIFGEKEMRKHLKEHKPFECVVCHKRFSAKSELRRHVKIHTGERPHKCNMCGAKFAKTSGLKTHFKIHTGEKPFECNICHHKFNLKWNLTKHLTRHTGEKPYECEICHRRFREKFPFKIHLRTHTGEKPFQCNICGVRYSANTELNVHLMRHSGETPYQCQVCQRRFPVKRALYWHSKIHDKSYECSICQRRFSVNQKLQSHMRIHTGEKPHECNVCKRSFSVKKSLDLHLKSHECVSDELGNLNKPFECDVCQLRFSKKKTLQIHLKTHIQISLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-