Atra019237.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amyelois transitella
Gene Symbol
Zbtb11
Assembly
GCA_032362555.1
Location
CM063575.1:4104098-4108712[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 3.6e-05 0.0024 18.8 4.8 1 23 33 55 33 55 0.98
2 27 0.0052 0.35 12.0 5.3 1 23 61 83 61 83 0.97
3 27 9.7e-06 0.00065 20.6 1.0 1 23 89 111 89 111 0.98
4 27 0.00011 0.0075 17.3 3.8 1 23 158 180 158 180 0.98
5 27 1.3e-05 0.00087 20.2 3.4 1 23 194 216 194 216 0.95
6 27 0.00051 0.034 15.2 0.7 2 23 224 245 223 245 0.98
7 27 4.6e-06 0.00031 21.6 0.6 1 23 251 273 251 273 0.98
8 27 0.00037 0.024 15.7 0.6 2 23 288 309 287 309 0.97
9 27 8.9e-06 0.0006 20.7 6.7 1 23 315 337 315 337 0.97
10 27 0.0085 0.57 11.4 6.3 1 23 343 365 343 365 0.98
11 27 0.6 40 5.6 3.8 1 23 423 445 423 445 0.98
12 27 1.9e-05 0.0013 19.7 1.9 1 23 448 470 448 470 0.98
13 27 0.00011 0.0073 17.3 4.9 1 23 476 498 476 498 0.99
14 27 9.9e-07 6.6e-05 23.7 1.2 1 23 504 526 504 526 0.95
15 27 6.6e-06 0.00044 21.1 2.0 1 23 532 554 532 554 0.98
16 27 0.0053 0.35 12.0 1.5 1 23 560 582 560 582 0.99
17 27 1.1e-06 7.4e-05 23.6 0.1 1 23 589 611 589 611 0.99
18 27 1.7e-05 0.0011 19.9 1.4 1 23 617 639 617 639 0.98
19 27 0.00041 0.027 15.5 10.2 1 23 645 667 645 667 0.98
20 27 0.0035 0.23 12.6 0.4 1 20 740 759 740 762 0.92
21 27 0.0015 0.1 13.7 2.7 1 23 765 787 765 787 0.98
22 27 0.00021 0.014 16.4 1.9 1 23 793 815 793 815 0.98
23 27 5.8e-06 0.00039 21.3 2.5 1 23 821 843 821 843 0.99
24 27 3.8e-05 0.0025 18.8 4.5 1 23 849 871 849 871 0.98
25 27 1.7e-06 0.00011 23.0 1.6 1 23 877 899 877 899 0.99
26 27 7.1e-07 4.7e-05 24.2 2.3 1 23 905 927 905 927 0.98
27 27 3.7e-06 0.00025 21.9 2.8 1 23 933 955 933 955 0.99

Sequence Information

Coding Sequence
ATGGGATCGTTGGTATCCTCTTTGGCCTCATCACTCTCACCTTCTTTAATTAGATGTGTAAAGCAAAGTGATGTAAATACAAGTCCCGGAAAACGTTACAATTGTAAGCATTGTGATGCCAGTTTCGGTCGCAGTTATCATTTGAGCAGGCATCTTAAAATACACAGCGGAGACAAACCGTACCACTGTGATTACTGTCTCGCCAAGTTCAGTACTACGTATCATTTGAAAAGACATGTAACTATTCACACTGGCGAAGAGGGTTTCAAATGCGGTGTTTGTCAACGTGGATTTAAACGAGTGGATAATCTGAAATCGCATATCAAAAACCACGGGCATGTGCCAATGAAAGAGGAAGTCGTAGGAGGTTCCATTGAAAGAAATGAAAACTCTAGTACTACTGTAAAATGTGAATATGTAgatgaaaatttgaaaatagattGTCATGcgaaaaatattgatgattctaaatttgaatgtaAAGTTTGTCATCAATGTTTTTCCGATAAGAACGGTCTCGAGGATCATTTAAAATTGCACAGCAGAGAAAATGaaacaacaaaaacaattttgaaacgTTTTCTGTGCAACACCTGTGGAGCGAGGTTCAGTCGCAATGATCATTTGAAAAGACACTTTAGAATACATAACAGGAAGTCGAGCAGTAATAAATGTAGTCTTTGTTGGTCCACGTTTAATGATAGTGAAGAGTTGAGATCACATTATAGAATACATAACGTAGAGGAAAAGTACGAGTGTGACATTTGTAAACGTAGATTTACTGTAAAAGTTAACTTGGAGAAACATTTGGCGAGGCATTTTGATAAATCGAATCGTCAAGTAAAGGACAACGAGCCTGTGGTATGTAACGTGTGCGGTATAATTCTGAACAGAAAGTGCAGTTTGAAAATTCACATGTTGACGCACACTGGCGAGAAACCTCACGAATGTCACATTTGTCATAAAAGTTTCTCGCAACGCGGCAGCCTGAAATCCCATTTGAAAATACACACTGGCATAAAACCTTTCGAGTGTACCGTCTGCCATCATAGATTTTTTGCAAAGAACAATTTGAATACACATATGACTAAGCATAAAGACGATAAACCTCACGAGTGTGTGTTTTGTCATCATTTTTCTCCGAAAGAGAAGATAACGGCTGATGCTAGTAAACCTCAATCTTTTAATCAAGAAAATGAAACCACAACAGATATGAAACGAATAAAATCATTAGAACCGGTGTCTTCACTCAACAGTGTACCAGAATATGTCTGTCAGTTCTGCTACGTGACCTTCCAAAAGGAATATCACATGCGCggacatttaaaacaacataaaCCTCACGAATGTGGATATTGTCAAAGGAGATATGACAGGGCGATAGATTTAAAGAAACATATAAGAACACACACAGGTGAAAAACCGTACCAGTGTCACGTTTGTGAATGTAGTTACGCTCAAAAGTATTATTTGACGTCTCATTTGAGAGTGCACACGGGCGAAAAACCTTATCAGTGTAATATATGTGGTAAAAAATTCCGTACATCGGGCCATTTGAAACTTCACGCTGTCATACACGCGACTGAGAAACCGTACGAATGCGATATTTGTCATCGTACGTTTAATCAGAAAGGTGGATTAAAAATTCATCTGAAATACCATTCCGGTGACAAGCCTTACGAATGTAGAATATGTCACGCCAAGTTTATACTTAAGGACGTTATGGAGCGTCATTTGCGTAGACACGAGGGTTCAGAAAAGCCGTTTCAATGTAGCATCTGCGGAAAGGGGTTTTATGTAAAAGCTGATTTGACCGTACATTTAAGAGTACACACCGGCGAGAAACCATTTGAATGTAACATTTGTCTCATGAAATTCACTCAAAAAAGCACTTTGACTGTACATTTGAAAAGTCACACTGGTGAGAAACCGCACGAATGTCACGTATGCCATCATCGATTCTACACGAAGAGTAATTTGAATGCACATTTGAAGAAACACACGGGTTTCAGCGCAAAATTAACGAAAAAGGCATataatgaagataaaaataCCACAGACAAAAAAGCCCTGAGAAGAATAATGAAATTTGAACAGGTTGAAAGTACGAACGTTGAAACGAAAGCGGTTCAAAATGATGATTTCCTGAAAGTTGAATTGAAAGATGAAACCGTAGAAGCTAAACGCTTGAAGTGTTTAGTACGCGTTGAAGATAAATATGTGTGTCAATTTTGTGGCAGAACATTCGCAAACAAAAGACAGATGTTAGGCCATTTACCTCAGCACAGACCTTAcgaatgtgacgtgtgtcagAAAAGGTTTCTCAGGGGCAGCCATTTAAGACAACACACGAAAATACACACCGGTGAGAAACCTTTCGAATGCGACATATGTCACTGGAGATTGTCAACGGTGTTTAATTTGAAGAGACATTTATTGAAACATACAGGCGAGAAACCTTATCAGTGCAACGTGTGCGGGATCAGGTTGTGTAAAACTAGCGATTTGAACCGACACATGAGGACGCATACCGGCGAATTGCCGTACGAATGCAACGTTTGTCATCGTAGATTTAATCGGAAGGGTAATATGAAAACACATCTTAAACAACATACAGGCGAGAAACCTTACCAGTGCAATATATGCGGAGCTAGATTCTGTCAAAGTGTGTCGTTGCAAATACATCTGAGAAAACACACTGGCGAGAAACCATTTGAATGTAACGTGTGCAATCGAAAATTCAGTCAAAAAGCCAATTTGACTACTCATTTGAAGAAACATACAGGAGAGAAGCCATACGAATGTAATATATGTCAGCGGAGGTTCAATCAGAAAGGTAATTTGTATACGCATCAAAAAAAGCACACGAAAAAGTCCGATTCTGAGAAAGTTTCAGAAAAGAAAGATGCTGAATCAATTGCGAACACGTCCGATCAAATCAAAAGTTAA
Protein Sequence
MGSLVSSLASSLSPSLIRCVKQSDVNTSPGKRYNCKHCDASFGRSYHLSRHLKIHSGDKPYHCDYCLAKFSTTYHLKRHVTIHTGEEGFKCGVCQRGFKRVDNLKSHIKNHGHVPMKEEVVGGSIERNENSSTTVKCEYVDENLKIDCHAKNIDDSKFECKVCHQCFSDKNGLEDHLKLHSRENETTKTILKRFLCNTCGARFSRNDHLKRHFRIHNRKSSSNKCSLCWSTFNDSEELRSHYRIHNVEEKYECDICKRRFTVKVNLEKHLARHFDKSNRQVKDNEPVVCNVCGIILNRKCSLKIHMLTHTGEKPHECHICHKSFSQRGSLKSHLKIHTGIKPFECTVCHHRFFAKNNLNTHMTKHKDDKPHECVFCHHFSPKEKITADASKPQSFNQENETTTDMKRIKSLEPVSSLNSVPEYVCQFCYVTFQKEYHMRGHLKQHKPHECGYCQRRYDRAIDLKKHIRTHTGEKPYQCHVCECSYAQKYYLTSHLRVHTGEKPYQCNICGKKFRTSGHLKLHAVIHATEKPYECDICHRTFNQKGGLKIHLKYHSGDKPYECRICHAKFILKDVMERHLRRHEGSEKPFQCSICGKGFYVKADLTVHLRVHTGEKPFECNICLMKFTQKSTLTVHLKSHTGEKPHECHVCHHRFYTKSNLNAHLKKHTGFSAKLTKKAYNEDKNTTDKKALRRIMKFEQVESTNVETKAVQNDDFLKVELKDETVEAKRLKCLVRVEDKYVCQFCGRTFANKRQMLGHLPQHRPYECDVCQKRFLRGSHLRQHTKIHTGEKPFECDICHWRLSTVFNLKRHLLKHTGEKPYQCNVCGIRLCKTSDLNRHMRTHTGELPYECNVCHRRFNRKGNMKTHLKQHTGEKPYQCNICGARFCQSVSLQIHLRKHTGEKPFECNVCNRKFSQKANLTTHLKKHTGEKPYECNICQRRFNQKGNLYTHQKKHTKKSDSEKVSEKKDAESIANTSDQIKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-