Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 9.4e-05 0.079 13.6 0.1 13 44 112 140 106 140 0.86

2 7 4 3.3e+03 -1.2 0.6 19 27 161 169 153 171 0.86

3 7 9.4e-07 0.00079 20.0 3.1 2 44 173 212 172 212 0.95

4 7 3.6 3e+03 -1.1 3.1 17 41 219 240 214 241 0.69

5 7 0.017 14 6.4 6.4 2 38 233 265 232 269 0.91

6 7 0.6 5.1e+02 1.4 1.0 5 41 264 298 260 301 0.76

7 7 1.2 1e+03 0.5 1.8 6 30 295 319 294 331 0.73

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	9.4e-05	0.079	13.6	0.1	13	44	112	140	106	140	0.86
2	7	4	3.3e+03	-1.2	0.6	19	27	161	169	153	171	0.86
3	7	9.4e-07	0.00079	20.0	3.1	2	44	173	212	172	212	0.95
4	7	3.6	3e+03	-1.1	3.1	17	41	219	240	214	241	0.69
5	7	0.017	14	6.4	6.4	2	38	233	265	232	269	0.91
6	7	0.6	5.1e+02	1.4	1.0	5	41	264	298	260	301	0.76
7	7	1.2	1e+03	0.5	1.8	6	30	295	319	294	331	0.73

Coding Sequence: ATggaagatgaaataaaaattgaatatgaAGAATCGACAGAAATTGATCCTCTTTCTGGGGAAACACCATCATCAGAAACTGGTGTTAATATGCCTCGTGATGCACCTTCTCCAATATCAAGGGTGGAAGCAGACATTCTTAATAGTCCAGCACCGAAAATCATACCACATTTAGAGATAAATGAAGCTGCCGATGTAAAGaccTTAGAAAGCAAAGTCCtagttgaagaaaataaagaagagGAAACACCTGCAGAAAATAAAGGGAGCGCACTCAATTCTGCATTGGATaGTAATCAAGAAGATTCAGTCACCTGGTACAGAGCGATCGATAGTTCTGGAAAATTAATCTGCAATTTTTGCGATCGGACATACACAGTATTGACAAGCTTACGATACCACGTGAACATGAAGCATCCGGCTGAAGTTGTCTCTTTGAAGAATAACATACTAAAAAAACGCAGAAGCAGCCAACCTTTATGCCATCTTTGTAGAAAAAGGTTTAGTTGTTTAACAAAGTTAAAGAATCACATACAGgaacataaaatagaaaatgttgCCAATTCCTGCCCTCACTGCAATGCCGCCTTTAGCGAAACTCAAGAAATGATATACCATTTGAAAACAAACCATAAtgtattgcaaaataaattacacatatGTAACACTTGCGGATATAGAACGCACAAAATGTCGCATTTGAAGCAGCATATTTATACACATTCAACGGAAAAACGTAATAAATGTGAGTACTGCGATTATGCGACAAACCACAAATCTAATTTAAGAAATCATGAACGAATACATACGAGCAATAAGTCGTTCACTTGTAATTTTGATGGCTGTAAGAGCAGTTTTACAGATATGACTGGTTTAAATTATCATATTCAGAAACATTATCCAGATAAAAATATGCTTTATTGTGACCAATGTAGTTATAAAACTGTGTACAAACAGTCATTGAAAGTTCATGTTGAAAGTCATCTGCGGAGATGA
Protein Sequence: MEDEIKIEYEESTEIDPLSGETPSSETGVNMPRDAPSPISRVEADILNSPAPKIIPHLEINEAADVKTLESKVLVEENKEEETPAENKGSALNSALDSNQEDSVTWYRAIDSSGKLICNFCDRTYTVLTSLRYHVNMKHPAEVVSLKNNILKKRRSSQPLCHLCRKRFSCLTKLKNHIQEHKIENVANSCPHCNAAFSETQEMIYHLKTNHNVLQNKLHICNTCGYRTHKMSHLKQHIYTHSTEKRNKCEYCDYATNHKSNLRNHERIHTSNKSFTCNFDGCKSSFTDMTGLNYHIQKHYPDKNMLYCDQCSYKTVYKQSLKVHVESHLRR

Sequence clustering based on sequence similarity using MMseqs2