Atra022370.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- clz9
- Assembly
- GCA_032362555.1
- Location
- CM063579.1:7243392-7245491[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-06 0.00035 20.8 0.0 4 35 20 52 17 59 0.91
Sequence Information
- Coding Sequence
- ATGCCGCGCGTATACAAGAAAAAGGAATCTTCGAGGTCAGGACATGTAGATGAAGTGGCGATGGAGTCTGCTATAGAAGAAGTCGTAGATAAAACGTTATCTATAAGGAAATCGGCAGCCAAATACGGTATTAAGCCTTCTACGCTGGAATTACGacttgcaaaaataaaaaaaaatactaccaaTGAAGCTCCCCTACGTAGTTTTGCATCCAAATATACGTCTAAACAGGTATTCACCACGTCAGAAGAAGTACTTCTAAATAACTATATTGCAGAATGTTCTCGTATGAATTACGGGCTTACACTTGTACAACTTCGACAATTAGCGTATGAGTTTGCAAAAGCAAATAAGTTAGAGTATCCTTCTAGTTGGGATCATAATGGAATGGCTGGCTTGGACTGGGCAAAAAGTTATCGCCACCGTAATGTCAACTTAAGTCTAAGAAAGCCGGAGAATACAAGCGCTGCCCGTGCGTATGGTTTTAATAAGACTGCTGTCAatgacttttttaataatttagaagCTGTACTGACCAGATATAATTTTACTTGTGacagaatttataattttgatgaatCAGGAATTTCTACTGTTATGAGCACACCGAAAGTATTAGCCGAAAAATGTCGCAAGCAAGTCGGCCAACTAGTCTCAGGAGAAAGAGGTGAACTTGTAACTTTCGGGGGTATAATATCGGCCAGCGGTAACACTATTCCgccactttttatttttccaagaGTGCATTTTAAGGACCATTTTATGACAGGTGCCCCTGAAGGTAGCTTGGGTGTTGCCACAAGAAGTGGGTGGATAAATTCGGAAATTTTCATACAAGTGCTAAAACATATTCAAAAGAAGACATCATGCACAAAAGAAAACCCTATTCTGTTATTGGTCGATAATCATGAGAGTCACATCACGGTAGAAGCTATAGATTACGCCCGTGACAACGGCATAGTTTATATCTCATTTCCTCCGCATACAACGCACCGTCTTCAGCCATTAGACGTAGGGGTATTTGGCCCTTTTAAGGCCAAATTGAAAGTAGCATATAACGACTGGCATGTATCAAATCCAGGAAAGACTATGAACATTTACCAAATCCCAAAATTAGCTAAAATAGCCTACTTTGAATCCTTcaccaataaaaacataatgagTGCTTTTGAAAAAACGGGCATATGGCCATATAATAAACTTGCTTTTAGTGACGAAGATTTTGCTCCGGTTCAAGTTTACCAATCCAATTCTAACGctactataaatattaataggcaACAACAAGAAGACCCTAGTGAAGAAAACGTAATTGTTGAACAATCAACTCCACTGAATTCACCGCCATCGTCATCATCCCTGCTGCTACAATCAATAGACTTTGATGCACCATCATCATCTGCTCCTGGACTAATAACTCCAGAGGCAGTTCGACCCTATCCTAAAGTAAATAAGAGTCAAAGTACAAAGGCGAAGAAAGGAAAATTACCAGGAAAATCTAGAATTTACACAGACACACCAGAAAAGCAAAGGCTTCTAGAAATACAAAAGGCAAAGGAAATGAAAAAACAAGAGcaagaaagaagaaataaagcTAAAGAAATGAAGCGTGCATTGAAGATGATAGTCAAGACTGATAAAATAACGAAAccaaagatacaaaaaaaagatgCAGAGTTAGAAACTGATAGTGaagatgaaattaatataagtttaagGGAGAGCAGTTCTTCACCTTTATCGACTGAAGCATCGGATTTTGAAGAAGCAACTAATAAAGAAGAACCAGTATTGAGCCAAAACATTAATGAAGAAACTTTCGTATTagtacaatttgaaaaaaagtcaACTGTTCTTCATTATGTCGGAaaagttttaaagaaatatgGACCAATGGAATATCACGTTTCTTTTTTAAGAAAGAAACCAGGTTCTTGGAAGTTTGTTTTTCCAAATGTGATAGATGAAGGAACGGTCTTTTTGTCGGACGTCGTTGCAGTTTTACCTCCACCCAAATCAGCAAGCACTGCAAGGACTgcaaacatattttgttttgagaGAACCTTATTGGGTATAATGTTCAGTAgtttaataatttga
- Protein Sequence
- MPRVYKKKESSRSGHVDEVAMESAIEEVVDKTLSIRKSAAKYGIKPSTLELRLAKIKKNTTNEAPLRSFASKYTSKQVFTTSEEVLLNNYIAECSRMNYGLTLVQLRQLAYEFAKANKLEYPSSWDHNGMAGLDWAKSYRHRNVNLSLRKPENTSAARAYGFNKTAVNDFFNNLEAVLTRYNFTCDRIYNFDESGISTVMSTPKVLAEKCRKQVGQLVSGERGELVTFGGIISASGNTIPPLFIFPRVHFKDHFMTGAPEGSLGVATRSGWINSEIFIQVLKHIQKKTSCTKENPILLLVDNHESHITVEAIDYARDNGIVYISFPPHTTHRLQPLDVGVFGPFKAKLKVAYNDWHVSNPGKTMNIYQIPKLAKIAYFESFTNKNIMSAFEKTGIWPYNKLAFSDEDFAPVQVYQSNSNATININRQQQEDPSEENVIVEQSTPLNSPPSSSSLLLQSIDFDAPSSSAPGLITPEAVRPYPKVNKSQSTKAKKGKLPGKSRIYTDTPEKQRLLEIQKAKEMKKQEQERRNKAKEMKRALKMIVKTDKITKPKIQKKDAELETDSEDEINISLRESSSSPLSTEASDFEEATNKEEPVLSQNINEETFVLVQFEKKSTVLHYVGKVLKKYGPMEYHVSFLRKKPGSWKFVFPNVIDEGTVFLSDVVAVLPPPKSASTARTANIFCFERTLLGIMFSSLII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01016612;
- 90% Identity
- iTF_00072763;
- 80% Identity
- -