Atra003775.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amyelois transitella
Gene Symbol
clz9
Assembly
GCA_032362555.1
Location
CM063552.1:11572495-11575137[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.8e-07 0.00011 22.4 0.0 4 37 11 43 8 49 0.84

Sequence Information

Coding Sequence
ATGGCACCCAAAAAATCTTATACGCCGTTACAAATGGCGCAGGCTATTACAGCCGTCCGTGAAGGTGAAAAAATTTCAACGGCAGCGAAAAAGTTTGGTGTTCCCAGGATCACCTTACATGATAAAATTTCCGGTAAAACTCCAATTGAATGTTCTATGGGCCCTAGTACATATTTGTCAACAGAAGAGGAAGCTATTTTAGAAAAATGGATACTGGACATGGCTGAACGACACATTCCTATTACTAGAGATGAGTTGCTTGATAGCGTGCAACGTATCATCGTTGACCAAAAAAAGACTACTCCCTTTACCGACAATAGACCCGGTAAGAAATGGTACAATCTATTTCTTAAGAGACATCCTTCATTGTCTGAGAGAACGGCCCAAAATTTGACCACAGCACGAGATGCCGTTACAGAAGAAGGTATAAAACGTTGGTTTGGGGAAGTGAGCTCTTATCTTCAGGAAAACAACCTTAGAGAGATATTAGAAGATCCGTCGCGAATTTTTAACGGAGACGAAAGtgctttttatttatcaccCAAAGCCGGAAAAGTTTTAGCAAAAAAAGGTGATAAGCACGTCTACCAATCTTCTGGAGATGAAAAAGATAACTTGACGGTACTAATTACCGGAAATGCCGCTGGACAATTAGCACCTCCAATGGTAGTTTTTTCTTATGAAAGAATTCCATCCACAATTTCATCCAAATTTCCAGAAGATTGGGCTATGGGACGATCTCCGAGTGGCTGGATGTGTAGTAGTACATTTTTTGAATACATTGCCAACATTTTTAATCCATGGTTATTACAGCAAAATATACCAAAACCCGTCTTGTTTTTTTTGGATGGCCATAGATCTCACTTGACATTACACCTATCGAACTTTTGTGCTCAAAATGGCATAGAAATCGTGGCATTATATCCAAATAGCACACATATCCTTCAGCCAATGGACCTAGCTATTTTCAGGCCATTGAAAATATATTGGAATAAAGCTGTCAAGGATtggaaattaaaacatttaggaatgaatttaaaaagagAAGATTTTGCCCCTGTTCTTAAGACAGCGTTGGAATCAATAACAGAGAGTTCTGTTAAAAATGGATTCCGCGCTGGTGGATTGTATCCCTTTGGCCCTGACTACGTCGATCTCTCCAAAATAAAGTCTCGCAACAAGAAGGAGGCTTCGTCagaacaaatattgttttttgattatctagaaaaagaaatagtgGCGAAGCTACAGAAGGAAAAGTTGCAGATATTTAATGACCTTTACTATAAAGACagacaaaatttaaacattcacTTAAATGAAGAAGACCTATCGCTCTACATAATATGGGCTAGTAATAAGCAAGCTATTGAACTTTCAGGTCACGTTAATGAGCAATCTACTTCACCCCAGACCCTCGTTGAAATACCAAATCCTAATGAAATCAATCCTGCAGAATCTCTTTCTGCTACAAATGCAGATACAGATGTACAATATCAATTTGACATACAACTAGATCATGACTATTTACCACATATTACTCTATCTAATGCAGGATATGACGCAACCACATCCACTTGCACCCCAAATGACGCTCCAAAATCTAGAGAAATACTGGATAATTCATTGACTGTCGCTAGCCCAAGTTCTAACTTAAATGATCCTATTCCAACAACTTCAACTTCCTGTTCTTATACGTTTATGTTTGATATTGCCACAAAAATAACACCTTCAAAAGAATTGACAAGACCTGGGAATTCTCAAATCGGCCAAAGTTCTGCAGAAAAGACACCCGTGAAAGAGCTGACAAGACCTGAGACATCAAAAATTAACCAAAGTTCCATAAAAAAGACACCTTTGAAAGAGCTGGCAATACCTGGGacaacaaaatttattcaaaagaaaggagaaagtacatatattattccATCACCATTTAAGCGAAATTTATTTTGGCCAGGAGAAGAtgaaaacaaaggaaaaaaaagaaaactgaaggAAAAAATTCCTTTTGTTATAACAAGTAAACCATGGAGGGAATATAATGAAAGGAAagacattgaaaaaaaagaaaaagagaaacaaaaagaaattaaagccaaagaaagagaagaaagaaGACTATTAAAACTGAGAGAGAcggaagaaaaaaagaaacgacagatggagaaagaaattaaaaccaaGGAagggaaaaagataaaaaaatctaaaccaGATGACACATCTTCAGATAATACGGACATTGAAGTGCATTATGCAGAAAGTGAAGACAGCTTAGATATGCAAATAGATGCAGAAAAAACAGAACATGAAAAATCTGAGAGCTCGACTCAATCCGAAGATGTGCCACTGATCAGATTTTCTAAGAAATCTAGAAAATATTCCATTGGAAACTATGTCATAATAAGGTATGAAGGGGAATACTTCCCAGGCGTAATAGAAGGTATTCGTGGAAATAGATTTGAAATTAGTACAATGACCTTTTCAGTGGGAAACACATACAAGTGGCcggaaaaaaaagataaaatcttTTATGAAAAGTCTGACATCATTGAGGCAATATCCCCACCAGTGCTGTGCAATAAAAGGGGTTTCTATACGATACccgaaatgaaaaaatatctacCTTTTgctatttaa
Protein Sequence
MAPKKSYTPLQMAQAITAVREGEKISTAAKKFGVPRITLHDKISGKTPIECSMGPSTYLSTEEEAILEKWILDMAERHIPITRDELLDSVQRIIVDQKKTTPFTDNRPGKKWYNLFLKRHPSLSERTAQNLTTARDAVTEEGIKRWFGEVSSYLQENNLREILEDPSRIFNGDESAFYLSPKAGKVLAKKGDKHVYQSSGDEKDNLTVLITGNAAGQLAPPMVVFSYERIPSTISSKFPEDWAMGRSPSGWMCSSTFFEYIANIFNPWLLQQNIPKPVLFFLDGHRSHLTLHLSNFCAQNGIEIVALYPNSTHILQPMDLAIFRPLKIYWNKAVKDWKLKHLGMNLKREDFAPVLKTALESITESSVKNGFRAGGLYPFGPDYVDLSKIKSRNKKEASSEQILFFDYLEKEIVAKLQKEKLQIFNDLYYKDRQNLNIHLNEEDLSLYIIWASNKQAIELSGHVNEQSTSPQTLVEIPNPNEINPAESLSATNADTDVQYQFDIQLDHDYLPHITLSNAGYDATTSTCTPNDAPKSREILDNSLTVASPSSNLNDPIPTTSTSCSYTFMFDIATKITPSKELTRPGNSQIGQSSAEKTPVKELTRPETSKINQSSIKKTPLKELAIPGTTKFIQKKGESTYIIPSPFKRNLFWPGEDENKGKKRKLKEKIPFVITSKPWREYNERKDIEKKEKEKQKEIKAKEREERRLLKLRETEEKKKRQMEKEIKTKEGKKIKKSKPDDTSSDNTDIEVHYAESEDSLDMQIDAEKTEHEKSESSTQSEDVPLIRFSKKSRKYSIGNYVIIRYEGEYFPGVIEGIRGNRFEISTMTFSVGNTYKWPEKKDKIFYEKSDIIEAISPPVLCNKRGFYTIPEMKKYLPFAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00072759; iTF_00072760; iTF_00072762;
90% Identity
iTF_00072760;
80% Identity
iTF_00072762;