Atra023059.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063579.1:10338486-10338947[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-08 4.3e-06 27.0 0.0 2 38 16 52 15 56 0.93
Sequence Information
- Coding Sequence
- ATGCCTGGTAATTATAAAAGAACATCGACGCGAAAAAGTTGGTCACAAGAAGACATGGATAAGGCCATCGaagctgtaaaaaataataggatggGTTGGCTTTTAGCATCTAAACATTTCAACGTGCCACAAGCTACCCTTCGTCGTCATTATCATAGTACTCCAGTAAATCTTGGTCGTTTTAAGCCAACCTTCAATAAAGATATGGAAAAAGCACTCGTAGATCGTGTTCTTGAGTTTGAAAGTCGTCTTTTTGGTTTTAACACGactgaaataagaaaattagCTTTTGAATTTGCTGAAAAATTGGGACTGAATCACAGATTTGATAAGAATGAGAAGATAGCTGGGTGGGATTGGCTCAAGGGGTTTAGAGAACGCAACCCAAATATTGCACTCAGAGCTCCCGAGCCAACCTCAGCTGCAAGAGCAAGGGCATTCAATAAGTCTCAAGTATCATAG
- Protein Sequence
- MPGNYKRTSTRKSWSQEDMDKAIEAVKNNRMGWLLASKHFNVPQATLRRHYHSTPVNLGRFKPTFNKDMEKALVDRVLEFESRLFGFNTTEIRKLAFEFAEKLGLNHRFDKNEKIAGWDWLKGFRERNPNIALRAPEPTSAARARAFNKSQVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00859398; iTF_00794486; iTF_01534745; iTF_00162511; iTF_01182777; iTF_00835501; iTF_00017277;
- 90% Identity
- -
- 80% Identity
- -