Atra007959.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063558.1:3566814-3567749[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-08 4.4e-06 26.9 0.1 15 39 27 51 21 57 0.89
Sequence Information
- Coding Sequence
- ATGGTTCagaaatacaaaagaaaaccTCAACAGGCATCGTGGGATGTTACAACCATGAAGCTAGCAATGGAAGAGGCAGGAAAAACATCAGTCAGGAATGCTGCTAAAAGATATGGTATTAATTTGTCAACTCTACAAAGACATATTAAAAAAGGTTCTGCGGAAAAAAGTCTTGGCCGATTTCGTTGCGTTTTTACAGAAGAACAAGAAACagaattaattgaatatttattacacATGGACAACTTGTTTTATGGCCTGAACAAACAAGAATTTTGCCGTCTGGCTTTCGAGTATGCAACAGCCAATAATATACCTCATCCATTCAAACAAAATACTGCAGGAGATGATTGGTACAAAAGTTTTAGAATCAGACATCCTGAAGTTACATTGAGACAACCCGAACCGACCTCAGTAGCTCGTGCCCGAGGATTTAATAGGCCACAGGTGGAAAGATTCTTCAATCTCCTAGAAGAGCAGATTGACAAACACAAAGTAGATGCTACGAGAATTTATAATGTTGACGAAACGGGCATCCAAACAACCAGCAACAAGCCTCCAAAAGTTCTCTCAAAAACAGGCAAAAAGCAAGTAGGAGTCATATCTAGTGTCGAAAGAGGAAAATTGACAACAATCGTATGCTGTTGCAATGCAGCTGGCGGTTTTATACCACCGTTTATGATATTTGGACGAAAACGCATGCAGGAACGACTGTTGGATGGATCACCACCAGGCACTGAAGCCGTTTGTACTGATAATGGATGGATTTCTGGTCCAACTTTCTTGGATTGGCTGCGACATTTCGTGGCAATGACAAGACCAACTCAAGAAAAGAAAGTTATTCTTATATTGGACAATCATTCCTCACACAAATATTTGCCAGCTCTGGATTATGCTTCAAAAAACCACGTTCTACTTTTGATAGTTTACTGCTAA
- Protein Sequence
- MVQKYKRKPQQASWDVTTMKLAMEEAGKTSVRNAAKRYGINLSTLQRHIKKGSAEKSLGRFRCVFTEEQETELIEYLLHMDNLFYGLNKQEFCRLAFEYATANNIPHPFKQNTAGDDWYKSFRIRHPEVTLRQPEPTSVARARGFNRPQVERFFNLLEEQIDKHKVDATRIYNVDETGIQTTSNKPPKVLSKTGKKQVGVISSVERGKLTTIVCCCNAAGGFIPPFMIFGRKRMQERLLDGSPPGTEAVCTDNGWISGPTFLDWLRHFVAMTRPTQEKKVILILDNHSSHKYLPALDYASKNHVLLLIVYC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072728; iTF_00072734; iTF_00072735; iTF_00072736;
- 90% Identity
- iTF_00072734;
- 80% Identity
- -