Atra011755.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063563.1:4249325-4251409[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-10 7e-08 32.7 0.1 2 37 16 52 15 59 0.89
Sequence Information
- Coding Sequence
- aTGGTTCGTGACTACAAACGCAAAACTAACAGAGGGTCGTGGTGCGAAGAATCCATGCGAGAAGCAGTTAAAGCTGTTTTGGATGCAAAAATGGGTTATTATAAAGCAGCTAAACAATTTGATGTGCCACAGACGACATTAGAGAGAAAAGTTAAGGCTGCCCGCTCCGTAATGAAGGAAACATCCGATGAAAACTTACCTATACCAATAAAAGTACCATTGGGTCCTAGGCTGCCTGTTTTTTCTGCGTTTGAAGAAGATGAGCTGTGTGCCTACATATTAGAAATGGAAGAAAGGTTATATGGGCTAACGGTTAAAGATGTAAAGAGATTAGTATATAAgttagcaataaaaaataataaacctaaTCCGTTTAATGCTGAGAAAGAAGAAGCTGGTAGAGAATGGATGAATGGCTTCCTAAAACGACACCCAGAGCTTTCAATTAGAAAGCCTGAAAATACTTCTGCTGCCAGAGCATCTGGTTTTAACAAAGTTGCAGtagaaaaattctttaattTCCTCGGCAACGTGTACGATGAACACCAACTCACTCCTGACCGTGTATATAACTGTGACGAAACTGGGGTGTCTGTTGTgccaaaaacaaaatcaaagaTAATCGCTAAAAGAGGACGGAAACAGGTTGGAGCCATAGTTTCAGCAGAACGAGGACAGACGGTAACGGTCGAGATATGCTTCAGTGCAGCAGGAAACTACATGCCACCTATGCTTATTTTTCCAAGAAAAAGGATGACTCCAGAGTTGATGGTGAATTCACAAGCTGGTGCTTGGGGCACATGTAGTGATTCAGGCTGGATAACTTCCGAGCTGTTCCTTCAATGGTTTAAGAGATTTGTGATTTTCAGTGGAGCATCTAAAAAGAGACCCGTGCTTCTTTTACTAGATGGGCACAGCACACACACTCAAAATATTGACCTGATCAATGAAGCCAGAGCACATGGTGTTATAATCTTGTGTTTTCCTCCACACACAACTCACCGTTTACAAGTTGCGGATGTTGCGTTCATGCGACCATTGAGCGTTTATTATGAACAAGCCGTTACAGCCTGGCTGCGGTCTAACCCTGGACGAGTTGTTACTATCCGCCAAGTCGCTGAAATATTTGGAAATGCATTTGTTCAAGCAGCCGCTATGTCTACAGCAGTAAATGGATTTCGAAAATGTGGAATTTGGCCCTATAATCCAAACGTGTTTACCGAATCAGATTTTGCCCCTTCTTTGACAACCGAGATCCAGTTAAATGACAGTCAAACGTCCACAAACCAAGAAGTATTACAAGATATAAGCAATGTCACTACTGCCCAAACTATAGACACAGTAGCTGCACAAACAGCTGATAATGCTGCGACTTTAAACAGACACGTTGCTGATGACTCTTTGCCAGGGTGTTCCCACTGGAGTCCCAGGTTAGGTAATCAGGAACCACCATCAACATCATATCAAACTCAGGACCACCCAGAGACATTACAAACAGAACAAATTCAATCCGACTCATTAAAACCAGCTAAAAACCCTGTTCGTCAAGAACCAGAGACATCACAACCAGATAAAGTGCCAACATGCGATAAAAACGACAGTAGTTTTACTTTGGCTTCTCCAAAACAACTCCTTCCACTTCCGCTAACTAAAAAATCCTCTCGTATTACTAAAAAGCGTGGGAAAACAGTAATTATCACGTCGTCTccctacaaaaaagaattagaaGTTATCGCCCAGAAGAAAAAAGATGCTGAACAGAAAAAAATAGAGAAAATGgaaacaaagaaaagaaaagatgaattaaaaaaacagaAGAAAACTACTACAaaagcacaaaataaaaaatctaagaaAAATAGCCGAACAGTGAAAACAGCTAAACGACGAAGAGTCTCATCATCTGGAGATGAAAGTGAAGAGAAGGACACATCATGTATTTATTGTTCGGAATTATATTCTGTTTCCATTGAAGGGTGGATATCATGCTCAATATGCAAAAGATGGTCTCATAATAGCTGCGCAGGaatagatgatgatgatgacgagGCCGTCCACGTCTGCGAGTTCTGCCAGTGCAAATAA
- Protein Sequence
- MVRDYKRKTNRGSWCEESMREAVKAVLDAKMGYYKAAKQFDVPQTTLERKVKAARSVMKETSDENLPIPIKVPLGPRLPVFSAFEEDELCAYILEMEERLYGLTVKDVKRLVYKLAIKNNKPNPFNAEKEEAGREWMNGFLKRHPELSIRKPENTSAARASGFNKVAVEKFFNFLGNVYDEHQLTPDRVYNCDETGVSVVPKTKSKIIAKRGRKQVGAIVSAERGQTVTVEICFSAAGNYMPPMLIFPRKRMTPELMVNSQAGAWGTCSDSGWITSELFLQWFKRFVIFSGASKKRPVLLLLDGHSTHTQNIDLINEARAHGVIILCFPPHTTHRLQVADVAFMRPLSVYYEQAVTAWLRSNPGRVVTIRQVAEIFGNAFVQAAAMSTAVNGFRKCGIWPYNPNVFTESDFAPSLTTEIQLNDSQTSTNQEVLQDISNVTTAQTIDTVAAQTADNAATLNRHVADDSLPGCSHWSPRLGNQEPPSTSYQTQDHPETLQTEQIQSDSLKPAKNPVRQEPETSQPDKVPTCDKNDSSFTLASPKQLLPLPLTKKSSRITKKRGKTVIITSSPYKKELEVIAQKKKDAEQKKIEKMETKKRKDELKKQKKTTTKAQNKKSKKNSRTVKTAKRRRVSSSGDESEEKDTSCIYCSELYSVSIEGWISCSICKRWSHNSCAGIDDDDDEAVHVCEFCQCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00282200; iTF_00288783; iTF_00288784; iTF_00288785; iTF_00288786; iTF_00942742; iTF_00282199; iTF_00942743; iTF_00651686; iTF_01569238; iTF_00373866; iTF_01361517; iTF_00373852; iTF_00373853; iTF_00373854; iTF_00373855; iTF_00373856; iTF_00373857; iTF_00276268; iTF_01342147; iTF_01342148; iTF_01342149; iTF_01342150; iTF_00036550; iTF_00276236; iTF_00711759; iTF_01525864; iTF_00711758; iTF_00711760; iTF_01424978; iTF_01029149; iTF_00937203; iTF_00041718; iTF_00276216; iTF_00851704; iTF_01251672; iTF_00276221; iTF_00288782; iTF_00942739; iTF_00942740; iTF_00942741; iTF_00628186; iTF_01342146; iTF_01028195; iTF_00113252; iTF_01403366; iTF_01208049; iTF_00063508; iTF_00695412; iTF_00695413; iTF_00695423;
- 90% Identity
- -
- 80% Identity
- -