Atra007491.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amyelois transitella
Gene Symbol
clz9
Assembly
GCA_032362555.1
Location
CM063557.1:7575297-7578571[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.7e-12 8.6e-10 38.8 0.0 2 39 16 53 15 58 0.90

Sequence Information

Coding Sequence
ATGGTgcgaaattataaaagaaaaacagataGGGGATCGTACAAGAAAGAAGACTTACAAGCAGCAGTACATGCTGTTAGAAATGGCTCATTAACTGGGTACAAAGCTGCTCAAATTTATAACATTCCAAGGACCACAATAATGGACCACGTCCACAGAAAAAGGCTCTCTAATACTCTTGGAAAAAGACCTACGTTATCACCGGACATAGAGAATAACATAGCAAGTTGTCTCCATATTATGGAAAAATATGGCTTTGGCCTGACCAGGGCTGAAATTTCCGATTTGGTGGCGGAATATGTCAccaaaaacaatatacaaactTGTTTCAAAAATGGAAAGCCAGGAAAGGATTGGATAGCTGGTTTTCGAGAAAGAAATAATCTGTCAATTAAAAAACCACAGCCTGTGGAATACGCGCGTAAAGTAGCAGCTGATCCTTTCGTGTTGAGCGAGTATTAcgaattgttaaataaaacaattaaaactttAGGTTTACAAGATAAACCAGGAGCTATttggaatgtggatgaaaccaACTTTTCCAAGGATCCCCTTAAATCGAAAATCGTTGGTGTCAAAGGTCATGCTGCTACAAGGACGATATCTACACCAGGTAAAGACAATACCACAGTTTTACTAGGAGCTAGCGCTGCAGGGGACAAAATCCCACCCTTAATCATCTTTAAAGGCAAATATGTCTGGGACGAATGGACTTCGCCAAATGCATATCCTAGGACCACTTATGCTGCCACCAAAAATGGATGGATGGAGAGTGACGTTTTCgaagctttttttaaaaaatcttttttaccgAGTATAGGCGTTGAGCGCCCcgtattgttaatttatgaTGGCCACGCAACCCACGTTGGTTTGAACATTATTGAAGCGGCAAGGGATGCAAATGTTACCATCTTAAAACTTCCGCCCCATACAAGCCATATACTCCAACCATTAGACATTTCAGTCATGAAGTCCTTCAAAGATCGTTGGGATAAAGTTCTTGTGAAGTGGCAGAGATTAAATATAGGCGTACAATTGCCAAAAAAAGAGTTTTCACGTATTATTGGAGAAGTATGGGCCGGCATAGAGCCACAAATACTTATGAATGGTTTTCGTAAAGCCGGGATATACCCTTTTAATCCTACAGCAGTTGATAAATCAAAGTTAGATCCTATGAAATTGGCCCGATTTCAAGAACAGAGTTCTGCGTTAgcaccaaaaaaatatgaaccacAAAACTTAATATCAATAGTATTGACATTGATGAACAAAAACATTACACAAACTCCTAATAGGCGGCTTGAAATTGTACAGGAATGTAATTCTATAAGCACTACCAATACCAAGGAACAAGCTGCGATAAAAAAGCCAAACATCCCATTTGAAGAGTTATTACTGGAAAAAATTAAGCGTAGTGACACCTCAACAAAAGTAAAGCGAAGTAGAGTTGCAACAGGTGCAGAGGTTATCACTCACGATGATGTGTTAACATTGAAAAgagaaaagcaaataaaaaaaaacattaaattagaaaagaataaaaaacatatatctaACAATGTGTGCTTGTTAACTCAACTATCAAAAAATAGTGCTGAAAGGCAACCATTTTCGGGGAAACAAAATCTGCCTGCCTGTTTACAAAATCAAACGCCTGATGCCCGTAAAATAATAGTTACATCAAACATCGTGCTTAAAAAAGCTGGAGCAGTTGATTACTCTTCGACAAAACCTGGCCCATCAGGCATCCACAAAAAAAAGACAAGGACAAATAAATATGCAGCATCTTTCATGATTAAGGGTAAAGACAATAGTAAGAAGAAAAGTGGCAAAGAGAACAGCAAActatattatagaaataaaccTACAAAGAGTTATGAAACAGAATCTACCAGTTCAACGACCAGTGTATCTGGAATTATGAGTTGTCACAGCGACTCCGATATATTGAATTTCGAATCAGATGATGATCTAAATGATATTGATGGACTTTCATTGGCAGATAACGAAAACAGAAAAAGTGAAGAAGAAAacactgaaaaagaaaatactgaaatagaaAGAACTCATACTGTAAACACTAACAATGATCACGATGCTATTGAACCTCCAACCGATAAAAATGAGAATGTAAAGGTGGGTGAAATTTCTTCAGGAAACTATACAGTGAAAGACTATGTTTTAGTCCGTTACTATGGGAAGAAATGGATTTATTATGTAGGAGTAATAGAATCTATAGATGCTTGtgacaaaacaaacataatctATTCAATTAAGTTTTTCAAAACGGTAAAAAAACCAAAGCTTCTCTTcaaatttcctaaaaaaaatgaTCGTGATGAAGTAACAATTCTGTCGATAGTAAAAAAAGTGGAATTATTTCAAGATGCGGACAACAACAATGAATACTTCCTAAGTAATTTAGATGACGCAGTGTACTTTCTTTAG
Protein Sequence
MVRNYKRKTDRGSYKKEDLQAAVHAVRNGSLTGYKAAQIYNIPRTTIMDHVHRKRLSNTLGKRPTLSPDIENNIASCLHIMEKYGFGLTRAEISDLVAEYVTKNNIQTCFKNGKPGKDWIAGFRERNNLSIKKPQPVEYARKVAADPFVLSEYYELLNKTIKTLGLQDKPGAIWNVDETNFSKDPLKSKIVGVKGHAATRTISTPGKDNTTVLLGASAAGDKIPPLIIFKGKYVWDEWTSPNAYPRTTYAATKNGWMESDVFEAFFKKSFLPSIGVERPVLLIYDGHATHVGLNIIEAARDANVTILKLPPHTSHILQPLDISVMKSFKDRWDKVLVKWQRLNIGVQLPKKEFSRIIGEVWAGIEPQILMNGFRKAGIYPFNPTAVDKSKLDPMKLARFQEQSSALAPKKYEPQNLISIVLTLMNKNITQTPNRRLEIVQECNSISTTNTKEQAAIKKPNIPFEELLLEKIKRSDTSTKVKRSRVATGAEVITHDDVLTLKREKQIKKNIKLEKNKKHISNNVCLLTQLSKNSAERQPFSGKQNLPACLQNQTPDARKIIVTSNIVLKKAGAVDYSSTKPGPSGIHKKKTRTNKYAASFMIKGKDNSKKKSGKENSKLYYRNKPTKSYETESTSSTTSVSGIMSCHSDSDILNFESDDDLNDIDGLSLADNENRKSEEENTEKENTEIERTHTVNTNNDHDAIEPPTDKNENVKVGEISSGNYTVKDYVLVRYYGKKWIYYVGVIESIDACDKTNIIYSIKFFKTVKKPKLLFKFPKKNDRDEVTILSIVKKVELFQDADNNNEYFLSNLDDAVYFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00072678;
90% Identity
iTF_00072678;
80% Identity
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