Atra005003.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- clz9
- Assembly
- GCA_032362555.1
- Location
- CM063554.1:5355019-5358293[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-12 8.6e-10 38.8 0.0 2 39 16 53 15 58 0.90
Sequence Information
- Coding Sequence
- ATGGTgcgaaattataaaagaaaaacagataGGGGATCGTACAAGAAAGAAGACTTACAAGCAGCAGTACATGCTGTTAGAAATGGCTCATTAACTGGGTACAAAGCTGCTCAAATTTATAACATTCCAAGGACCACAATAATGGACCACGTCCACAGAAAAAGGCTCTCTAATACTCTTGGAAAAAGACCTACGTTATCACCGGACATAGAGAATAACATAGCAAGTTGTCTCCATATTATGGAAAAATATGGCTTTGGCCTGACCAGGGCTGAAATTTCCGATTTGGTGGCGGAATATGTCAccaaaaacaatatacaaactTGTTTCAAAAATGGAAAGCCAGGAAAGGATTGGATAGCTGGTTTTCGAGAAAGAAATAATCTGTCAATTAAAAAACCACAGCCTGTGGAATACGCGCGTAAAGTAGCAGCTGATCCTTTCGTGTTGAGCGAGTATTAcgaattgttaaataaaacaattaaaactttAGGTTTACAAGATAAACCAGGAGCTATttggaatgtggatgaaaccaACTTTTCCAAGGATCCCCTTAAATCGAAAATCGTTGGTGTCAAAGGTCATGCTGCTACAAGGACGATATCTACACCAGGTAAAGACAATACCACAGTTTTACTAGGAGCTAGCGCTGCAGGGGACAAAATCCCACCCTTAATCATCTTTAAAGGCAAATATGTCTGGGACGAATGGACTTCGCCAAATGCATATCCTAGGACCACTTATGCTGCCACCAAAAATGGATGGATGGAGAGTGACGTTTTCgaagctttttttaaaaaatcttttttaccgAGTATAGGCGTTGAGCGCCCcgtattgttaatttatgaTGGCCACGCAACCCACGTTGGTTTGAACATTATTGAAGCGGCAAGGGATGCAAATGTTACCATCTTAAAACTTCCGCCCCATACAAGCCATATACTCCAACCATTAGACATTTCAGTCATGAAGTCCTTCAAAGATCGTTGGGATAAAGTTCTTGTGAAGTGGCAGAGATTAAATATAGGCGTACAATTGCCAAAAAAAGAGTTTTCACGTATTATTGGAGAAGTATGGGCCGGCATAGAGCCACAAATACTTATGAATGGTTTTCGTAAAGCCGGGATATACCCTTTTAATCCTACAGCAGTTGATAAATCAAAGTTAGATCCTATGAAATTGGCCCGATTTCAAGAACAGAGTTCTGCGTTAgcaccaaaaaaatatgaaccacAAAACTTAATATCAATAGTATTGACATTGATGAACAAAAACATTACACAAACTCCTAATAGGCGGCTTGAAATTGTACAGGAATGTAATTCTATAAGCACTACCAATACCAAGGAACAAGCTGCGATAAAAAAGCCAAACATCCCATTTGAAGAGTTATTACTGGAAAAAATTAAGCGTAGTGACACCTCAACAAAAGTAAAGCGAAGTAGAGTTGCAACAGGTGCAGAGGTTATCACTCACGATGATGTGTTAACATTGAAAAGagaaaagcaaataaaagaaaacattaaattagaaaagaataaaaaacatatatctaACAATGTGTGCTTGTTAACTCAACTATCAAAAAATAGTGCTGAAAGGCAACCATTTTCGGGGAAACAAAATCTGCCTGCCTGTTTACAAAATCAAACGCCTGATGCCCGTAAAATAATAGTTACATCAAACATCGTGCTTAAAAAAGCTGGAGCAGTTGATTACTCTTCGACAAAACCTGGCCCATCAGGCATCCACAAAAAAAAGACAAGGACAAATAAATATGCAGCATCTTTCATGATTAAGGGTAAAGACAATAGTAAGAAGAAAAGTGGCAAAGAGAACAGCAAActatattatagaaataaaccTACAAAGAGTTATGAAACAGAATCTACCAGTTCAACGACCAGTGTATCTGGAATTATGAGTTGTCACAGCGACTCCGATATATTGAATTTCGAATCAGATGATGATCTAAATGATATTGATGGACTTTCATTGGCAGATAACGAAAACAGAAAAAGTGAAGAAGAAAacactgaaaaagaaaatactgaaatagaaAGAACTCATACTGTAAACACTAACAATGATCACGATGCTATTGAACCTCCAACCGATAAAAATGAGAATGTAAAGGTGGGTGAAATTTCTTCAGGAAACTATACAGTGAAAGACTATGTTTTAGTCCGTTACTATGGGAAGAAATGGATTTATTATGTAGGAGTAATAGAATCTATAGATGCTTGtgacaaaacaaacataatctATTCAATTAAGTTTTTCAAAACGGTAAAAAAACCAAAGCTTCTCTTcaaatttcctaaaaaaaatgaTCGTGATGAAGTAACAATTCTGTCGATAGTAAAAAAAGTGGAATTATTTCAAGATGCGGACAACAACAATGAATACTTCCTAAGTAATTTAGATGACGCAGTGTACTTTCTTTAG
- Protein Sequence
- MVRNYKRKTDRGSYKKEDLQAAVHAVRNGSLTGYKAAQIYNIPRTTIMDHVHRKRLSNTLGKRPTLSPDIENNIASCLHIMEKYGFGLTRAEISDLVAEYVTKNNIQTCFKNGKPGKDWIAGFRERNNLSIKKPQPVEYARKVAADPFVLSEYYELLNKTIKTLGLQDKPGAIWNVDETNFSKDPLKSKIVGVKGHAATRTISTPGKDNTTVLLGASAAGDKIPPLIIFKGKYVWDEWTSPNAYPRTTYAATKNGWMESDVFEAFFKKSFLPSIGVERPVLLIYDGHATHVGLNIIEAARDANVTILKLPPHTSHILQPLDISVMKSFKDRWDKVLVKWQRLNIGVQLPKKEFSRIIGEVWAGIEPQILMNGFRKAGIYPFNPTAVDKSKLDPMKLARFQEQSSALAPKKYEPQNLISIVLTLMNKNITQTPNRRLEIVQECNSISTTNTKEQAAIKKPNIPFEELLLEKIKRSDTSTKVKRSRVATGAEVITHDDVLTLKREKQIKENIKLEKNKKHISNNVCLLTQLSKNSAERQPFSGKQNLPACLQNQTPDARKIIVTSNIVLKKAGAVDYSSTKPGPSGIHKKKTRTNKYAASFMIKGKDNSKKKSGKENSKLYYRNKPTKSYETESTSSTTSVSGIMSCHSDSDILNFESDDDLNDIDGLSLADNENRKSEEENTEKENTEIERTHTVNTNNDHDAIEPPTDKNENVKVGEISSGNYTVKDYVLVRYYGKKWIYYVGVIESIDACDKTNIIYSIKFFKTVKKPKLLFKFPKKNDRDEVTILSIVKKVELFQDADNNNEYFLSNLDDAVYFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072678;
- 90% Identity
- iTF_00072678;
- 80% Identity
- iTF_00072678;