Atra019126.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063575.1:3077788-3082327[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-12 1.3e-09 38.2 0.0 2 41 7 45 6 49 0.93 2 2 6.8 1.6e+03 -0.5 0.0 6 19 125 137 124 138 0.84
Sequence Information
- Coding Sequence
- atgaaaaaaaatattttagaagaagATTTAACGGCAGCAGTAGCTGCATATGAAAATGGGATGCCCCAAAGAGAAGCTGCTCGGAAATTTAATATTCCGAGAGCAACTTTACAGTTTCGACTTAGTGGAAAACCTATAAAAACTAGACCAGGTCTACCAACCATTCTCGCAGAAACCGAAGAGCAAAAGCTCGCCGAGTGGATATTTACCTCTAGCAAAAAAGGTTTTCCCAGAAGAAAGGAAGATGTTCTTTATAGTGTAGACAAGTTCATGAAAAAAACACCAAGACCaagtaaatttaaagacaaCAAGCCTGGAGAAGCGTCgtataaactatatttaaagAGACATCCAGAAATTGCCAAAAGAACTGCAGAAGCAGTTAAGTACGTAAGTTCCAATGTCTCTCAAGAAAATATTAGAAATTGGTtcaaacatctagaaaaaaacgCTTACAGACGAAAACTTAAAATCCTTAAAGATCCAACTAGAATCTTCAATGGAGACGAGACGGGGTTTCAACTTTGTCCTAAACAAGGAAAAGTTTTGGTTTTATCTATTTTGCTCAagTTGTCTCAAGAGATTAGTATTTCTTTCCTCTATTTCGGCTCTGCGGCTCGAGATTTCTATGAGAGATCGGCGAGCCGCCTCCTGGGACACGGGCGGATCCCGTCGCAGCGCGCGGcgtgggcggcggcgcggcgtaGAGCCGGCAGCGGCGTGCGCGGTGACCGCGCGGCAGGAGGCTGCACTTCCGCAGCCTGCGGCGCTGGCGGGAGCGTTAAGATCCTCGACGGAATGAAAACTCTTGGGTAG
- Protein Sequence
- MKKNILEEDLTAAVAAYENGMPQREAARKFNIPRATLQFRLSGKPIKTRPGLPTILAETEEQKLAEWIFTSSKKGFPRRKEDVLYSVDKFMKKTPRPSKFKDNKPGEASYKLYLKRHPEIAKRTAEAVKYVSSNVSQENIRNWFKHLEKNAYRRKLKILKDPTRIFNGDETGFQLCPKQGKVLVLSILLKLSQEISISFLYFGSAARDFYERSASRLLGHGRIPSQRAAWAAARRRAGSGVRGDRAAGGCTSAACGAGGSVKILDGMKTLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -