Atra013871.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063566.1:4459525-4459944[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-13 6.8e-11 42.3 0.1 5 40 19 54 18 57 0.92
Sequence Information
- Coding Sequence
- atgccAAGAAGTAGAAAGCGGACGACATCAAAGGCTAGTTGGACATCGGTTACGTTGGAGTCTGCAATAAACACTATAAGAAATGAAGGAATATCGGTTAATAAAGCGGCACAACAATATCAAATACCTTACAGCACACTGAAGAAACGGTACAGGTTAGCAATTACTGATGACAGTTCTTACAGTCGTTCTCCGACGCTCGGTAGGAAACCTGTGTTCACTAGTGAACAGGAACAGATACTTGTTAAGCATATACTCGATATGTCTAACATATTTTACAGTTTAACAAGCATTCAACTGCGAAAAATATGCTACAATATGGCTGTGAACTACGGTCTCGAAAATAGATttaatactgaaaaaaaaaagtgctGGGAAAGATTGGTTGTACGGATTCATGAATCGACATCCAGAACTTAG
- Protein Sequence
- MPRSRKRTTSKASWTSVTLESAINTIRNEGISVNKAAQQYQIPYSTLKKRYRLAITDDSSYSRSPTLGRKPVFTSEQEQILVKHILDMSNIFYSLTSIQLRKICYNMAVNYGLENRFNTEKKKCWERLVVRIHESTSRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621158;
- 90% Identity
- iTF_00621152;
- 80% Identity
- -