g8400.t1
Basic Information
- Insect
- Amphipyra tragopoginis
- Gene Symbol
- -
- Assembly
- GCA_905220435.1
- Location
- HG992020.1:8680062-8687973[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.2e-05 0.0027 17.0 0.2 1 23 250 273 250 273 0.97 2 10 9.4 6e+02 0.2 0.2 3 23 300 321 298 321 0.74 3 10 0.00032 0.021 14.3 1.0 1 23 344 366 344 366 0.98 4 10 3.1e-05 0.002 17.5 1.5 1 23 370 392 370 392 0.98 5 10 0.04 2.6 7.7 6.6 1 23 397 420 397 420 0.94 6 10 0.0022 0.14 11.7 0.4 3 23 429 450 427 450 0.93 7 10 2e-05 0.0013 18.1 1.6 1 23 456 479 456 479 0.98 8 10 1e-05 0.00065 19.0 3.0 2 23 486 507 485 507 0.96 9 10 1.8e-07 1.1e-05 24.5 2.7 1 23 513 535 513 535 0.98 10 10 7.6e-05 0.0049 16.3 2.9 1 23 541 564 541 564 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTGGTCGGTGTTTGCCGCTGCTGCCTCGCCCAGGGCCTGAACAAAGACTTGCAGTCAAGTTACCTTTGGTTGGACAAAAAAGAGGTTTACTCTGAAATGTTACAAGAATGCTTCAATATCATTCTGACACCATCAGACCAGACATCCTGCGGTATCTGTGACTCATGTATCAAGAGCCTCCGCAGCTCTTTCAACTTCAAGCAGCAAGTATTGAGTGCTGAGGAGGATTTCATAAAGAAGATAAATAGCGGTTTTGAAAAAGATGAAAAACCGTTTGAAGTAAAAATAGAGCCCAAACCTGACAGTGGTGATGAATCTGATGACTATTATCTGGCAGATGTAGCAAGTGAAACCtccatagaaaaaataaaaagcgaAAAGGTAGCTCCCGTCAAAAAGAAGACAGTAACGAAGCGTAGCAAACCGAAGTCTAGTACTGCCGTCAAGAAGACGTCCGCCTCCGCTGACGAACCATGGAAGAGTGAAAAGATTAAGAGTTTGGTGTCCAGACTTGCTACTTCTATTAAATCCTGCGAAATGCCAGACATAAAACCCGTAAAAAAGACCGAAATCAAACCCAAAAAAACCAGACTAAAACTAACAGTCCCAAAAGAAGAATCCAAAATAAATCTACATTGGACTCGGCAAGCCAACCATGAGAAAGTGAAACACAGAGAGAACCTTGAAACCATACTGAAATACTCAAGCGCTACTCCTTTCACCAACAAAACTCTCCTCGGATACTCCTGTGGTTACTGCGAGCTAAGTTACCCAGATCCGGCTGACTTGAGGCATCATACCGAGACCGTACACAAGAAAGAACGCCTGAGATTCAAAGCCCACTTCGATATGACTGAATACAACGTCAAAGTCGATGTTGCAGAACTAATTTGCACGCTATGTGACTATAAAATGGACAACCTCGGCATTTTGAAGGAGCATCTCGTTAAAACACATGGAAAAACTATTTATACCGATATTAAAGACCATATTATACAGTTTAAGCTGAAAAAAGGAGATACATACGAGTGCGCGATGTGTCCATCGACTTATGAGACgtttaaaatgttaaaacaacacatgaacaagcattacagCAACTATACATGTTCTAGTTGTGATTCCTCGTTTGCTACCAAGCGTTCCTTAAATGCTCATCGAACAACACATCAGGAAGGAAGTTTTAAATGCGATCACTGCGAGAAAGTCTTCCCAAGTCGCACTAAAAAGCATTACCATGAAAAAATGAAGCATTTAGGAGCAAGAAACATATCAAATTGTCCATACTGCAACGTTCCATTCCGCAGCTACTATCAACGGAACCAACATTTAGTGAAAGTGCATAATAATGAAGCTCAGTATAAGTGTAATGTGTGTAGCAAGTCATATATTTTAAAGAGTTTGTTAATGTATCATATAAAGAAAAGCCATTTGATGGAACGGAATTGTCAGTGCACTGAGTGCGGGTACCGTTTCTTCAGTAAAAAGGCTTTGAAAGCTCACATGGTAAAACATACAGGGGAACGGATATATTCTTGTGAGGTTTGTCATAAATCGTATGCGAGGAAGTATACGTTGAGAGAGCATATGCGGATTCATAATAATGATAGGAGGTTCAAATGTGAGGTTTGTAGTTTGACGTTTGTCCAGAAATGTAGTTTGAAAAGTCATTTGTTGTCCAACCATGGGATTAGTATGGCGGCTTGTGAGATTACTAAGAAATCTTAG
- Protein Sequence
- MEVVGVCRCCLAQGLNKDLQSSYLWLDKKEVYSEMLQECFNIILTPSDQTSCGICDSCIKSLRSSFNFKQQVLSAEEDFIKKINSGFEKDEKPFEVKIEPKPDSGDESDDYYLADVASETSIEKIKSEKVAPVKKKTVTKRSKPKSSTAVKKTSASADEPWKSEKIKSLVSRLATSIKSCEMPDIKPVKKTEIKPKKTRLKLTVPKEESKINLHWTRQANHEKVKHRENLETILKYSSATPFTNKTLLGYSCGYCELSYPDPADLRHHTETVHKKERLRFKAHFDMTEYNVKVDVAELICTLCDYKMDNLGILKEHLVKTHGKTIYTDIKDHIIQFKLKKGDTYECAMCPSTYETFKMLKQHMNKHYSNYTCSSCDSSFATKRSLNAHRTTHQEGSFKCDHCEKVFPSRTKKHYHEKMKHLGARNISNCPYCNVPFRSYYQRNQHLVKVHNNEAQYKCNVCSKSYILKSLLMYHIKKSHLMERNCQCTECGYRFFSKKALKAHMVKHTGERIYSCEVCHKSYARKYTLREHMRIHNNDRRFKCEVCSLTFVQKCSLKSHLLSNHGISMAACEITKKS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01539055;
- 90% Identity
- -
- 80% Identity
- -