g7928.t1
Basic Information
- Insect
- Amphipyra tragopoginis
- Gene Symbol
- -
- Assembly
- GCA_905220435.1
- Location
- HG992017.1:350512-354654[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.18 12 5.6 0.9 2 23 285 305 284 305 0.95 2 15 0.00077 0.049 13.1 0.5 1 20 313 332 313 334 0.93 3 15 0.00077 0.049 13.1 0.5 1 20 356 375 356 377 0.93 4 15 0.00077 0.049 13.1 0.5 1 20 399 418 399 420 0.93 5 15 0.00077 0.049 13.1 0.5 1 20 442 461 442 463 0.93 6 15 0.00077 0.049 13.1 0.5 1 20 485 504 485 506 0.93 7 15 0.00077 0.049 13.1 0.5 1 20 528 547 528 549 0.93 8 15 0.00077 0.049 13.1 0.5 1 20 571 590 571 592 0.93 9 15 0.00077 0.049 13.1 0.5 1 20 614 633 614 635 0.93 10 15 0.00077 0.049 13.1 0.5 1 20 657 676 657 678 0.93 11 15 0.00077 0.049 13.1 0.5 1 20 700 719 700 721 0.93 12 15 0.00077 0.049 13.1 0.5 1 20 743 762 743 764 0.93 13 15 0.00077 0.049 13.1 0.5 1 20 786 805 786 807 0.93 14 15 0.00077 0.049 13.1 0.5 1 20 829 848 829 850 0.93 15 15 0.00077 0.049 13.1 0.5 1 20 872 891 872 893 0.93
Sequence Information
- Coding Sequence
- atggatCAAATTTGTCGATTATGTTGTTCTACGAAGTTtgtcaataataatatatttgacGAGGAAAATGCGTTGTACATTAAATTATCGCTATATTTACCAATAAAGGTTTTCAAGAACGACCGGCTCCCTCAGAAGGTCTGCGATAAGTGCAGCTGCAAAGTGAATGACTTCTATCAGTTTTGTAATGAAACTATTGAAGTTCAAAACAAATTACGCTCGTTATTCCTGCCATCTCCTGCCTGCATTGATGGCTCGGTCGACCTCACACTCGTCAAAGACAGTGCATCTCCTCCACCCATCCATATTTTACAATGTGAGAGGAGCACACAGACAGACATCCTGGATGTAACCTATGACTGTAGTATCTCAGTACAAATCAAAGAGGAACCAAAATCAGTTTCTTTATCGCCCGTCAAGAAAGAAGAAGATAGTTACTGTAATATAGACTCAGATAACTTAGAGGACAGGTCTTCAGACAGTGAGGATATATccttattaaatttaaaaaagaaaaagactaAGAAGTCAGCTGTGAATGGAACAGTTGCTGAAAAACGAGGTCGGAAGAAAAAGGCAGATATAAAAAAATGGGAGGTGTTGATAAACTCCCTGCCTGAGGCGACACTCACTGTGGTGGAGAAGGGTGAGCCGGTACCACTGGACACCATCAAGGAGGAGATAGATGAGAAGCCACCCAAGATAAAAGAACTTGATTTGTTTCACTGCTGTGTCTGTTTCACTCAGTGTTTTAGCAGGAATGATATGTTGCAGCATTACAGACAGCATTCATCAGACTTATCGGGGAGCGAGCCGCcagccgcgccgccgccgccggacCAGGAGCCACTGCGGTGTACGCGCTGTCGGAAGGTGGTTACCCGGGACGAGTGGAGCAAGCACTGGCAGCGTCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTAAGAGTAGAGCAAGCACTGCACTGGGAGCGCGACCGGCGCCCGTACCGCTGCGCTCTGTGCGAGAAGACCTTCCGCGACCCCTACCAGATACTTAAGCACGGTCACACTTGTTCTTGTTTAGTTAACGTCAGACTGCAGCGAGTAGTGGCGCGTCATTATtactga
- Protein Sequence
- MDQICRLCCSTKFVNNNIFDEENALYIKLSLYLPIKVFKNDRLPQKVCDKCSCKVNDFYQFCNETIEVQNKLRSLFLPSPACIDGSVDLTLVKDSASPPPIHILQCERSTQTDILDVTYDCSISVQIKEEPKSVSLSPVKKEEDSYCNIDSDNLEDRSSDSEDISLLNLKKKKTKKSAVNGTVAEKRGRKKKADIKKWEVLINSLPEATLTVVEKGEPVPLDTIKEEIDEKPPKIKELDLFHCCVCFTQCFSRNDMLQHYRQHSSDLSGSEPPAAPPPPDQEPLRCTRCRKVVTRDEWSKHWQRHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRVEQALHWERDRRPYRCALCEKTFRDPYQILKHGHTCSCLVNVRLQRVVARHYY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -