Basic Information

Insect: Amphipyra tragopoginis
Gene Symbol: -
Assembly: GCA_905220435.1
Location: HG992020.1:9221412-9231341[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.012 0.79 9.3 0.5 1 23 254 276 254 276 0.96

2 10 0.026 1.6 8.3 0.6 2 23 303 325 302 325 0.93

3 10 3.8e-05 0.0024 17.2 0.2 1 23 348 370 348 370 0.98

4 10 5.2e-06 0.00033 19.9 0.9 1 23 374 397 374 397 0.97

5 10 0.00015 0.0095 15.3 2.0 1 23 402 425 402 425 0.95

6 10 0.061 3.9 7.1 1.4 1 22 431 452 431 454 0.82

7 10 3.4e-08 2.2e-06 26.8 2.7 1 23 461 484 461 484 0.98

8 10 0.00059 0.038 13.4 3.8 1 23 490 512 490 512 0.97

9 10 1.4e-07 9.2e-06 24.8 1.6 1 23 518 540 518 540 0.99

10 10 2.8e-05 0.0018 17.6 2.9 1 23 546 568 546 569 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.012	0.79	9.3	0.5	1	23	254	276	254	276	0.96
2	10	0.026	1.6	8.3	0.6	2	23	303	325	302	325	0.93
3	10	3.8e-05	0.0024	17.2	0.2	1	23	348	370	348	370	0.98
4	10	5.2e-06	0.00033	19.9	0.9	1	23	374	397	374	397	0.97
5	10	0.00015	0.0095	15.3	2.0	1	23	402	425	402	425	0.95
6	10	0.061	3.9	7.1	1.4	1	22	431	452	431	454	0.82
7	10	3.4e-08	2.2e-06	26.8	2.7	1	23	461	484	461	484	0.98
8	10	0.00059	0.038	13.4	3.8	1	23	490	512	490	512	0.97
9	10	1.4e-07	9.2e-06	24.8	1.6	1	23	518	540	518	540	0.99
10	10	2.8e-05	0.0018	17.6	2.9	1	23	546	568	546	569	0.96

Sequence Information

Coding Sequence: atggAACCAAGGAAAAGTACCACGAGTTACGGGGAGTGCCGGTGTTGTTTAGCGAAGGGCCAACACCGAGATATAATGAAAGAATACTATTATAACGGGATCCGCGAAGTGTACTTCGATATATTTATGGAAagctttaatttatttCTATCAACCAACGCCATGCTGCCTACTCTAATATGTTCAAACTGCGTGCAGCGTCTCCGCGACGCGACCAGCTTCCGTATGATGGTGGTCAGTACGGAGAGGCAGCTGCTAAGTGCCATAGCCGGTGATGATAAGGATACGGTGTTTGTTAATGttcATGTGGAAGAAAATATGTTGGACAGTAGGATCGATGTGAAGATAGAGAGACAGACAGTGGATGTGAAGGATGAGCCAGATGACACACACATTGACATTGACTATGAGTCTGACTATGTCGCCAGTGACTATGTATCAGACGGCCCTGCAGATAACTTGGAAGCGCGTGAGGCGGCGTTACTGGGGCGTTTCGCGCGCGTCAAGCTACCTCCACTGCCCACACGACGGATACTGCCCGAAATATGTCCTGACTACTGCCGACAACTTGATCTGTTGCAAAATATAAAAGTCCTCCCAAAAAGCATAATGAAGCTCATTGAAGACAGTGACAGAAGACCAGTTTCAAGTGGACCACGCCGTGTATTCATATCAGAGAAGTTGGCACACATAGTCAACGCGGGCACCCTTCTAGAAAATTCCAACGTTACCCCATTTAAAAGCAAGAGTCGAACCGGATTCCCTTGCTTCTACTGCAGAAACATCTTCGAAAATCTCGAGAAACTTCGAGAACATACCATCGAACATAAGAAGTCGGAAATTAAGAATATtttgaagacttatggggcagaATGCTTGGTTGTTTATGTAGATATAACTGATCTAAAATGCACATTATGTGAGAAGAAAATTCAGAATCTCAATGAGCTAAAATCTCACCTAACTAATGTacataaaaagaatatttataCAGAATTTTCTGATAGAGTTATACCGTTTAAATTATCTTCAAACAGTGTTTACGAATGCCAAGTTTGTGGGTTTAACTTCGAGACTTTTGGTTCAATAGAACGACATATGAATGTACATTACAGGAATTATGTTTGCAAGGAATGTGGGACGGGTTTCGTAACCAAATATCGCTTGAAAGTTCACACAAAAAGCATGCATGTTGGCGGGAATTTTCCTTGCGAAGTTTGCGGTAAGACATTTACAACACAACAGAAGCATAAAAATCATGTTAACTCCGTACATAAGTTGCTAAAAAGATTTAAATGCACTAAATGTCCGGAGCGCTTCGCTGAGTATTTTAGAAGACAGAAGCATTTAGTTCAAGTGCATGGTGTGGCGCCTTTACAATATAAGTGCAACGTATGCGACAAAAGTTTCGATAGGCGATACACTTTGTCGAGACATATGAAACGAGATCATTTGGAAGAAAGAGATTATCAATGCGAGATGTGCTCATATAAATGCTTTACGAAGAACGAATTACGTGTTCACATGGTCAAACACAACGGGGAACGGATTTACGAGTGTTCTGTCTGCAAGAAGTCGTACGCAAGGAAGAAGACTTTGAAAGAGCATATGCGAATTCATAATAATGATCGCAGGTTCTCGTGCGCGGTCTGTGGACAGGCGTTCGTTCAGAAGTGCAGTCTCAAAGGGCATTTGAAGACTCATCATTTAGAATTTAGTTTGCAGTAG
Protein Sequence: MEPRKSTTSYGECRCCLAKGQHRDIMKEYYYNGIREVYFDIFMESFNLFLSTNAMLPTLICSNCVQRLRDATSFRMMVVSTERQLLSAIAGDDKDTVFVNVHVEENMLDSRIDVKIERQTVDVKDEPDDTHIDIDYESDYVASDYVSDGPADNLEAREAALLGRFARVKLPPLPTRRILPEICPDYCRQLDLLQNIKVLPKSIMKLIEDSDRRPVSSGPRRVFISEKLAHIVNAGTLLENSNVTPFKSKSRTGFPCFYCRNIFENLEKLREHTIEHKKSEIKNILKTYGAECLVVYVDITDLKCTLCEKKIQNLNELKSHLTNVHKKNIYTEFSDRVIPFKLSSNSVYECQVCGFNFETFGSIERHMNVHYRNYVCKECGTGFVTKYRLKVHTKSMHVGGNFPCEVCGKTFTTQQKHKNHVNSVHKLLKRFKCTKCPERFAEYFRRQKHLVQVHGVAPLQYKCNVCDKSFDRRYTLSRHMKRDHLEERDYQCEMCSYKCFTKNELRVHMVKHNGERIYECSVCKKSYARKKTLKEHMRIHNNDRRFSCAVCGQAFVQKCSLKGHLKTHHLEFSLQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050187;
90% Identity: -
80% Identity: -