Basic Information

Insect: Amphipyra tragopoginis
Gene Symbol: -
Assembly: GCA_905220435.1
Location: HG992020.1:8657009-8658622[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.017 1.1 8.9 0.0 2 23 11 33 10 33 0.93

2 15 0.14 8.7 6.0 0.2 3 23 55 76 53 76 0.90

3 15 7.8e-05 0.005 16.2 2.6 2 23 82 104 81 104 0.95

4 15 0.0017 0.11 12.0 0.8 1 23 109 132 109 132 0.96

5 15 0.057 3.7 7.2 0.4 2 23 135 157 134 157 0.94

6 15 0.014 0.89 9.1 2.1 2 21 164 183 163 184 0.93

7 15 0.0012 0.075 12.5 0.5 1 23 244 267 244 267 0.93

8 15 0.11 6.8 6.4 0.2 3 23 296 317 294 317 0.94

9 15 0.011 0.7 9.5 0.4 3 23 341 363 339 363 0.95

10 15 0.00013 0.0083 15.5 0.6 3 20 370 387 368 391 0.90

11 15 0.002 0.13 11.8 0.3 1 23 396 419 396 419 0.97

12 15 8.6e-05 0.0056 16.1 0.2 2 23 425 447 425 447 0.94

13 15 2.9e-05 0.0019 17.6 4.8 1 23 451 474 451 474 0.97

14 15 4.1e-05 0.0026 17.1 0.6 2 23 481 502 480 502 0.96

15 15 0.0011 0.074 12.5 2.3 1 23 508 530 508 530 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.017	1.1	8.9	0.0	2	23	11	33	10	33	0.93
2	15	0.14	8.7	6.0	0.2	3	23	55	76	53	76	0.90
3	15	7.8e-05	0.005	16.2	2.6	2	23	82	104	81	104	0.95
4	15	0.0017	0.11	12.0	0.8	1	23	109	132	109	132	0.96
5	15	0.057	3.7	7.2	0.4	2	23	135	157	134	157	0.94
6	15	0.014	0.89	9.1	2.1	2	21	164	183	163	184	0.93
7	15	0.0012	0.075	12.5	0.5	1	23	244	267	244	267	0.93
8	15	0.11	6.8	6.4	0.2	3	23	296	317	294	317	0.94
9	15	0.011	0.7	9.5	0.4	3	23	341	363	339	363	0.95
10	15	0.00013	0.0083	15.5	0.6	3	20	370	387	368	391	0.90
11	15	0.002	0.13	11.8	0.3	1	23	396	419	396	419	0.97
12	15	8.6e-05	0.0056	16.1	0.2	2	23	425	447	425	447	0.94
13	15	2.9e-05	0.0019	17.6	4.8	1	23	451	474	451	474	0.97
14	15	4.1e-05	0.0026	17.1	0.6	2	23	481	502	480	502	0.96
15	15	0.0011	0.074	12.5	2.3	1	23	508	530	508	530	0.97

Sequence Information

Coding Sequence: ATGGAGATTAAGATAGATATCTCTGATATTTCCTGTGAGGTCTGCTCGGAACCTTTTCCGTCTTTTGATCAAGTTATCACTCATTTATATGTCAAACATAAGTTGGAGTACGACAGAGGTGTAGAGATGGCTATCGAAGAATATAAGCTCGATGATCTTAGCTGTATAGGATGCGAAGAAAAATTCACTTACTTCGGCTATCTAGTCTCCCACGTCAACAATAATCATCCGAAAAACTGTTTGATATGTGATAAATGCAAccaaaaatttaacaaaaagagaGATCTGTTCTCTCACATGAAGAACTATCATCGCGAAGGAGGATATCAATGCGAGATGTGTCCTCAAATCTTCAACTCATTGAATATCTTAAGAAAACACAGAAATAACAGGCATTTAACTCGATGTAACATATGCCATTTAAAACTACCGTCAGCCgcgttaaaacaaaaacatatagATATAGAACATCCAGATGATGGATCGTTACAATGCGATACGTGTTTCAAAGAATTTCACACCAAACAAGGCCTAAGAATGCACAACAGAAAATGTAAAGGAGAAAGTATCTTCGAAATTGCTATCAAGAAAGAAGAATACGTTGCAATGGATTTGGATCAAAATTACGAAGACCACACAAAAAGACCTAGTGTTAAGCAAATAAGAGAAAATATAGTTATAGTTATTAATATGTCTACGGCCAtaccttttaatttttataagaataagtTTAACTGTTTCTATTGTTCCAAAGACTTTCCAGATTCAGATTTGATGAGGGAACATACGGTTATGGAACATCCTGTTTGTGATGTTAAACAGAAATGTATTAGGAAATGTAGGGAGTCGGTAGCTTGCGTCAAAATCGATGTCTCCTCACTCGCTTGTAAGATTTGCTTTGAATCAATGATCGATTTAGAGCATTTACTTGACCATTTGATTGTTAAACACGATGCGAATTAcgataaatcgattacaacttgTTTACAGCCATATCGTCTGATCAAAGACCATATGGCTTGCCCAAATTGTCCTACCGAAGTGTTTAGGTTCTTCGGAACGCTTCTGAAACATATGAATAAAAAgcatactaataataatataatttgcgTTTACTGCGGTCAGACTTTTCGAAGAGATCAGAATTTGCGTGTTCACATCTGGAGGCATCATAGAGATGGAAGGTTCAAATGCAATATCTGTGGAGCCGAATGCAATATTCCTTCGCGTCTATACATGCATATGGCGCGAGCACATGGAGTCAAAGCAGCAAAATGCCCAAAATGCCCTGAAAGTTTCGCTACACAATACCTAAGACAGAAACATTTGATCGAAGCTCACGACTCTGGTCACAAATGCACTTATTGCGGGAAATTATTTACTAGGAACTCCTTCATGAGAGACCATGTGAGAAGAACTCATTTAAAAGAGAAGAACGTAGAATGCTCTATATGCAATATGAAGTTCTTCAATAATATACTTTTAAGGAGGCATATGGTTAAACATAGCGGGGAGAAGAATTTCCATTGTGATGTGTGTGGGGAGAGGTTCTTCTGGAGGAAGAGTCTTAGGACACATATGGCTAGGCATAATAAGCACcttaaccctgtataa
Protein Sequence: MEIKIDISDISCEVCSEPFPSFDQVITHLYVKHKLEYDRGVEMAIEEYKLDDLSCIGCEEKFTYFGYLVSHVNNNHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYQCEMCPQIFNSLNILRKHRNNRHLTRCNICHLKLPSAALKQKHIDIEHPDDGSLQCDTCFKEFHTKQGLRMHNRKCKGESIFEIAIKKEEYVAMDLDQNYEDHTKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTVMEHPVCDVKQKCIRKCRESVACVKIDVSSLACKICFESMIDLEHLLDHLIVKHDANYDKSITTCLQPYRLIKDHMACPNCPTEVFRFFGTLLKHMNKKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMARAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCTYCGKLFTRNSFMRDHVRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHNKHLNPV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01198043;
90% Identity: iTF_00172085;
80% Identity: -