Basic Information

Insect: Amphipyra tragopoginis
Gene Symbol: prg
Assembly: GCA_905220435.1
Location: HG991993.1:20670758-20672553[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.9 58 3.4 5.2 1 23 175 198 175 198 0.90

2 10 0.0007 0.045 13.2 0.4 1 23 204 227 204 227 0.96

3 10 2.7e-06 0.00017 20.8 4.1 1 23 233 255 233 255 0.96

4 10 1e-07 6.7e-06 25.3 2.8 1 23 261 283 261 283 0.99

5 10 6.8e-06 0.00044 19.5 0.1 1 23 289 311 289 311 0.97

6 10 0.00021 0.014 14.9 0.6 1 23 317 339 317 339 0.96

7 10 2.4e-05 0.0015 17.8 1.5 2 23 430 452 429 452 0.95

8 10 2.1e-05 0.0014 18.0 1.1 1 23 458 480 458 480 0.95

9 10 1.2e-05 0.00078 18.8 3.3 1 23 486 508 486 508 0.98

10 10 0.0014 0.088 12.3 0.0 3 23 517 537 515 537 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.9	58	3.4	5.2	1	23	175	198	175	198	0.90
2	10	0.0007	0.045	13.2	0.4	1	23	204	227	204	227	0.96
3	10	2.7e-06	0.00017	20.8	4.1	1	23	233	255	233	255	0.96
4	10	1e-07	6.7e-06	25.3	2.8	1	23	261	283	261	283	0.99
5	10	6.8e-06	0.00044	19.5	0.1	1	23	289	311	289	311	0.97
6	10	0.00021	0.014	14.9	0.6	1	23	317	339	317	339	0.96
7	10	2.4e-05	0.0015	17.8	1.5	2	23	430	452	429	452	0.95
8	10	2.1e-05	0.0014	18.0	1.1	1	23	458	480	458	480	0.95
9	10	1.2e-05	0.00078	18.8	3.3	1	23	486	508	486	508	0.98
10	10	0.0014	0.088	12.3	0.0	3	23	517	537	515	537	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATTATCGCTAATTTCCACACGCTATGTCGATTGTGTCTGAACAAAAGTACGTTCGCCACATCAATATTCGCAGCTGCGCCGGACGACGAAACAAATGTTGCTTTAACCTCTAAACTAGCGGAATGTTTCGATTTACAGATTGATCCTAATGATGGACTACCTAATAGAATCTGCTACAGATGCTTGTTCAAAGTGGATAAATGTTCAAAATTCAAACTACAGTGTATGCAAAATGAAACCAGATTGAGACAGATAACAAACAGAGTAAATGAACTGGATAACTCAAATTCATCAGAACTAAGCAATTACAACTATGGTTCCCAAGATGGACTGAAACCAAAGCCTGAAGATTATATAGTTGAAGATAGTGTTGTAATGGTTGTTGATCCAAGCCTCGACTATGACTCCTCTGAGTCTGAGAATATGGAGCCAGTTGAACCAGAAGTTATTGAAAGAGACAACACCCCGGAGGGAGAGCCAATGCCAGACTCCTTTTTCAAAAATGTGTTCATGTGTCAATTCTGTGATCAAGCATTTGTTTCGCAAGAAAAATGTAAGGAACATGAACACAAGTACCATGATCCCAATTTACCATATAAATGTGTTGAGTGTAGTTTAGTCTTTGCTGAGCGAAGTCAATATGTGCAGCACACTAAACAAGTACATGGCAATGATAAGCCTTACCATTGTCCGGAATGTAATAAATGTTTTGGTAGACGCTCTGATTTAAGAAAGCACTCCATTGTCCATACTGGCATAAGGCCATATCAATgtcaatattgtttaaaaagcTTCTCCCGCAACACTAACCTTAGCAAACATCTTCGTATTCACGCTGGACATAAACCTCATGTGTGTCCACTTTGTCCAAGAAGCTTTGTGGCTAAGGGAGATTTACAACGTCATGTGCTTGTTCATTCAGGAATGAAGCCATTTGCTTGTCGAAAATGTCCGTTATCTTTTGGCAGACGAGATAAACTCATCAAGCATGAAATGCAACATAGCCCAGGCAAGACAAATGAATTTGACAATGAACATGACAATCATGATATGGTAGTAAATGTAAACCCGTTTAGCAATCTTATGACTTCTCCTACTCAGCTCCACCCAGATTCGTCTAATGCTGATTATGACCTACCGAGAGTTCCAGACCATATATCTGGAGAGAGCAGTTTTATCAAAATGCAGAAAAATACTGCTTCAAGCAAGCCAGTACATCATTCTCCACCGAAGCAAAAAGCTGCAGCAAATAAAAACAGaccaaaaaacattaaatgtcaCCAGTGTCCCAAAAGATTTAGCTCATTAGATTCTTACAAAACACATGTGTCTATTGCCCATATAGGATCCAGGGTCTTCCAATGcaaaatttgttttaaaaagttCCCTCGAAAAAGGGAGTTGGACCGTCATGCAGCCCTTCATTCTGGTATGAAACCATTTTCATGTAGTCAATGTGataaaaaatttactaaaaagGATAAACTTGACAAACATGAGCAAACTCATGAATGCCTGGTTGTGAATATGCCTTGCATAGAATGTGGTGCCACTTTTGAAAAGAAACCTGATCTAGTTGCACATATAAAATCTCATTTTACTGAAAATTTTGATGATAAAATACCTGAATCTGAAATTAAGAAAGAAGAAGATCCTGAATTTAATTTGGATGACAATTTCTATGACTTGGAAACTTGA
Protein Sequence: MEDSYIIANFHTLCRLCLNKSTFATSIFAAAPDDETNVALTSKLAECFDLQIDPNDGLPNRICYRCLFKVDKCSKFKLQCMQNETRLRQITNRVNELDNSNSSELSNYNYGSQDGLKPKPEDYIVEDSVVMVVDPSLDYDSSESENMEPVEPEVIERDNTPEGEPMPDSFFKNVFMCQFCDQAFVSQEKCKEHEHKYHDPNLPYKCVECSLVFAERSQYVQHTKQVHGNDKPYHCPECNKCFGRRSDLRKHSIVHTGIRPYQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLQRHVLVHSGMKPFACRKCPLSFGRRDKLIKHEMQHSPGKTNEFDNEHDNHDMVVNVNPFSNLMTSPTQLHPDSSNADYDLPRVPDHISGESSFIKMQKNTASSKPVHHSPPKQKAAANKNRPKNIKCHQCPKRFSSLDSYKTHVSIAHIGSRVFQCKICFKKFPRKRELDRHAALHSGMKPFSCSQCDKKFTKKDKLDKHEQTHECLVVNMPCIECGATFEKKPDLVAHIKSHFTENFDDKIPESEIKKEEDPEFNLDDNFYDLET*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00185530;
90% Identity: iTF_00726723;
80% Identity: -