g3190.t1
Basic Information
- Insect
- Amphipyra tragopoginis
- Gene Symbol
- -
- Assembly
- GCA_905220435.1
- Location
- HG992000.1:4443325-4457621[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4 2.6e+02 1.4 0.8 2 19 266 283 265 287 0.72 2 15 0.00013 0.0083 15.5 1.9 1 22 292 313 292 316 0.92 3 15 0.0013 0.084 12.4 3.5 2 23 444 466 443 466 0.94 4 15 0.0013 0.081 12.4 0.0 1 23 472 494 472 494 0.95 5 15 0.013 0.85 9.2 0.2 1 23 505 528 505 528 0.88 6 15 1e-07 6.7e-06 25.3 3.5 1 23 533 555 533 555 0.98 7 15 0.00046 0.03 13.8 1.1 1 23 561 583 561 583 0.95 8 15 5e-05 0.0032 16.8 4.9 1 23 589 611 589 611 0.98 9 15 3e-07 2e-05 23.8 0.4 1 23 617 639 617 639 0.98 10 15 0.00036 0.023 14.1 3.9 1 23 645 667 645 667 0.98 11 15 0.00013 0.0082 15.5 0.1 1 22 673 694 673 694 0.95 12 15 0.0022 0.14 11.7 2.0 1 21 701 721 701 723 0.95 13 15 0.0022 0.14 11.7 2.0 1 21 758 778 758 780 0.95 14 15 0.0022 0.14 11.7 2.0 1 21 815 835 815 837 0.95 15 15 2.6e-06 0.00017 20.9 3.6 1 23 843 866 843 866 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTATTTCTATACAATTCCAATGTTTGTCGATTATGTGGGGAAGAAAATGATAATGGAACTTTATTATATTCGAGTGAAGAAAATAGTCAAAACTTAAGTGAAATAATTAACACGTATTTGCCAATCAAGGTATCTGATGATGGACAACTGCCTCGTACCATTTGTCCAGGATGCACTATACAATTGGAAGCCACCGTAGAATTCCTAACTCTTATTATCAATGGACAAAAAGTTATCCGTGAACTTCATTTGAGAGAGAAAGAATACAAGAGAACAATACTAAATCCCACTAGCGAACAAGAAActattacagaaaaaataatttatgaagTTAACACTAGCAATGGAGTGTACCAAGTTGAACACCCAATTGCGTTACAAGTTGCGGGTCTCGAAAAGCCAAAGCGTAAACGTGGTAGGCCACCAAAAAAGCCTAAAACTCCTGAGGAATTAGCTAAGGAGGCAGCTGCTAAAGAGCAGGAggtaaaacaaactaaaaaagatGAGAAAGATGATGAGCCTACTGGAAAACGGAGAAGGAAAACTCCGACGAGGTTCAGAGAAGCTGTACAGGGTAAAGAGCTTGAGAGGATATTCAAAGAAGAAGGGGTGACAGATGGAGAAGACAGTGAACCTGATATTAAGACCGAACTTAATCCAGATTTAAAGACCCCAGTCTCTAAAGAGCCCGAAGTCATTGGCCATCTGGAGGAATCTGGTGAACTAGTTGTTGTGGTCAAGGGAAAGGGCCGTGGGAGGCCTAAAGGCCCGATGCGCCTCACCCGCAAGGAATGTGCAATATGCGGAATGGAATTCACCTGCACTGGCCGGTACATGTCGCACGTGGCCCAACACGGACCAGTTCTGTACCAATGTGGGGAGTGCTCCGAGACCTTCACTACTCGGTTGCACTTCAACAACCATCAGAAGGAGCTTGGACATAGTGGACAAAATATTATACCGTGCAAGAAAAATGTTGAGAGAATTAGAGCTAAGAAGAGTGATAAATCCAAAGCTGAAACATTAATAATACCAGATGAGCTACCAGCAAAGCCTGATTCGCCATCAGTTCATATCATAGACAGTGTGATACTGCCCATACCAAACTCTTTGCCGGATTTAAATCCTCAGCCAATAGTTGTTGATAACGATGCGCCTGGTACACAGTTCCTGAAAACTGAAAGTCCTACGATTGAGATTTCTTCTAGTCCAAGTGTTGAAAGTGAAGTGAAAATTGTTgACTCAACCACAGACGCGACTGTGACAGAGAAGTCTGATGAAGTGGAACAAACTGAAATATCTCCGACTGGTAAAGTGAGACTTAAGTGTAACCATTGTGAGAAGACATTTAGCAGTAAACAAAGCAAGTCATTGCATATCAagGCGTCGCATCAGGGCGAGCGTCCGTACGTATGCGGAGAATGCGGGGCTCGCTTCGCTTACCCGCGCTCGCTAGCGTTACACGCTGTGTCGCATCGACGACACCGCGGCGGTAACGTGAAGGGGTTCGCGTGCGATCTGTGTGGGAAGGTCCTAAACCACCCATCATCAGTAGTATACCACAAAGAAGCAGAACACGCGGGTCAACGATACGTTTGCAATAAGTGCGGCAAGTCTTTCAAACACAAACAGTTGCTACAACGACATCAACTCGTCCACTCTCAAGACAGACCCTATAATTGTAAGTCGTGCAGCGCATCATTCAAGACGAAGGCCAACCTGCTGAACCACTCGCTCCTGCACTCTGGTGTTAAGAAGTTCTCGTGTGAGATATGCAAGCACAAATTTGCGCACAAGACAAGTCTCACGCTGCACATGAGGTGGCATACTGGTCAGAAGCCATACTCGTGTGCTACTTGCGGCAAGAGTTTCAGTCAGAAGGGCAACCTGTCGGAACACGAGCGCATCCACACTGGAGAGAAGCCGTTCCAGTGCACCATCTGTCCGCGCAAGTTCACCACGTCCAGCCAACACCGACTACACGCGAGGAGACATGCGGCCGATAGACCGTACGCGTGCGCGCATTGTGGGAAGAGGTTCGTGTCGCGCGGCTCGTGGGCGGCGCACGTGCGGCGCGAGGGCGGCGGGCGCACGCACCGCTGCGGCGAGTGCGGGCGCACGTTCGCGGAGCGCTGGCCGCTACTGAAGCACCTGCGCTGCCACGTCGTAGTGTTGTGGGTGTTTGTTAGTACTGCTGACGTCCGCAGGTTCGTGTCGCGCGGCTCGTGGGCGGCGCACGTGCGGCGCGAGGGCGGCGGGCGCACGCACCGCTGCGGCGAGTGCGGGCGCACGTTCGCGGAGCGCTGGCCGCTACTGAAGCACCTGCGCTGCCACGTCGTAGTGTTGTGGGTGTTTGTTAGTACTGCTGACGTCCGCAGGTTCGTGTCGCGCGGCTCGTGGGCGGCGCACGTGCGGCGCGAGGGCGGCGGGCGCACGCACCGCTGCGGCGAGTGCGGGCGCACGTTCGCGGAGCGCTGGCCGCTACTGAAGCACCTGCGCTGCCACTCGGGCGAGAGGCCCTTCCGCTGCCCGCACTGCCCCAGGGCCTTCGCCGACTGCTCCAACCTCAACAAGCATAAGAAGCAAGTCCACAAACAAATCAGCCTGCTCGCCAACTCCAACCAGCAGCAGGCACAACCCGCACCGCCAACACCAAAGGTGGAGCTGCCAGGATCACCGCAGATACTGTCGGAGCCCGTACAGACCGTCGCCATCCCGGAGACGTCGCCCGTCAAACTGATAGAGGAGGCGCAAGATGACGAGTTAGAGGAGCGAGTTATATACGTCACATATGACGTCGACGAGACCGACTCGCCTGCCTTCCATATATTAGACCCGGAACAGGCCGCCACCTTATCGGACAGTAAGGTTCTGACAACATGCGAGCTATACTCGGGCCCGTCGCTGCTAGTCCCGCAGCCCGAGTACGAGCAACTGGAGCTGGAACACGAGCAGCTGGAGCAGGAGGAACTAGAGCAGCTGCCTGAAGAGCTCGTGTTGGATGGACACGAACAAATGCCTgTAACGGATGAGCAGGGAAACCCTCTACACTTCACGATGCAAGATGGCACTCGGCTCGCTATCACATCCGCCGATGGAAAGTCTTTACAAGTGATAACACACGACGGCCAAACCATACCGGTTGAGATTAACGGATACGCCGATGAGGAGGAAGTGGACAATCCAGATACAATCGTTCATCAGCTGAACCTACAAAAGAGCGTAGATTCCAACGTATCGTCGCCTGTTACTCATTATTTTACAATTGTttga
- Protein Sequence
- MEVFLYNSNVCRLCGEENDNGTLLYSSEENSQNLSEIINTYLPIKVSDDGQLPRTICPGCTIQLEATVEFLTLIINGQKVIRELHLREKEYKRTILNPTSEQETITEKIIYEVNTSNGVYQVEHPIALQVAGLEKPKRKRGRPPKKPKTPEELAKEAAAKEQEVKQTKKDEKDDEPTGKRRRKTPTRFREAVQGKELERIFKEEGVTDGEDSEPDIKTELNPDLKTPVSKEPEVIGHLEESGELVVVVKGKGRGRPKGPMRLTRKECAICGMEFTCTGRYMSHVAQHGPVLYQCGECSETFTTRLHFNNHQKELGHSGQNIIPCKKNVERIRAKKSDKSKAETLIIPDELPAKPDSPSVHIIDSVILPIPNSLPDLNPQPIVVDNDAPGTQFLKTESPTIEISSSPSVESEVKIVDSTTDATVTEKSDEVEQTEISPTGKVRLKCNHCEKTFSSKQSKSLHIKASHQGERPYVCGECGARFAYPRSLALHAVSHRRHRGGNVKGFACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQDRPYNCKSCSASFKTKANLLNHSLLHSGVKKFSCEICKHKFAHKTSLTLHMRWHTGQKPYSCATCGKSFSQKGNLSEHERIHTGEKPFQCTICPRKFTTSSQHRLHARRHAADRPYACAHCGKRFVSRGSWAAHVRREGGGRTHRCGECGRTFAERWPLLKHLRCHVVVLWVFVSTADVRRFVSRGSWAAHVRREGGGRTHRCGECGRTFAERWPLLKHLRCHVVVLWVFVSTADVRRFVSRGSWAAHVRREGGGRTHRCGECGRTFAERWPLLKHLRCHSGERPFRCPHCPRAFADCSNLNKHKKQVHKQISLLANSNQQQAQPAPPTPKVELPGSPQILSEPVQTVAIPETSPVKLIEEAQDDELEERVIYVTYDVDETDSPAFHILDPEQAATLSDSKVLTTCELYSGPSLLVPQPEYEQLELEHEQLEQEELEQLPEELVLDGHEQMPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITHDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKSVDSNVSSPVTHYFTIV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -