Aocu013909.1
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- -
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000123.1:1920062-1926341[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.095 7.7 7.5 2.1 1 23 126 149 126 149 0.94 2 12 0.008 0.64 10.9 0.2 2 23 174 196 173 196 0.95 3 12 0.29 23 6.0 0.1 1 23 220 242 220 242 0.92 4 12 7.2e-05 0.0058 17.4 0.2 1 23 246 268 246 268 0.98 5 12 7.5e-05 0.006 17.3 0.5 1 23 273 296 273 296 0.96 6 12 0.0054 0.44 11.5 0.4 2 23 303 325 303 325 0.93 7 12 0.052 4.1 8.4 6.5 1 23 332 355 332 355 0.96 8 12 0.0003 0.024 15.4 5.3 2 23 362 383 361 383 0.96 9 12 0.0001 0.0082 16.9 1.7 1 23 389 411 389 411 0.98 10 12 0.55 44 5.2 0.1 1 20 558 577 558 581 0.75 11 12 0.004 0.32 11.9 0.2 2 23 607 628 606 628 0.96 12 12 0.00045 0.036 14.9 2.6 1 23 664 687 664 687 0.97
Sequence Information
- Coding Sequence
- atgtgtcctaaagttttcactatcagtgGATCGGACTCCGAAATACCTGATACGAAGCGAAGAATCATCCCGTTATTCCAAGTGTCTTACGACAGAAGCTTGTGTAGACCTCTCGGGACATTAATAGACTTCAGTAGATTCCGACAAAAGAATATTAAAGCCTTCTCTTCACCGGCAACAAGAGATTTCTCTCCGTCTCGCAGTCCATCACCTGTTTACTTAAGAACTGAACCGACGCCTTTAATTGATAGTACGGCGACATTATCCGTCCAAACTGTGAAACCTAAGGCGAAGAAAACTCCTGATATCAGGCAGAACGCTTTAGCTGTGTTTGAATTTTCAACGGTCTACCCATTTGTTTATGGCAGCAATAAGTTCAAATGTTTCATCTGCTCACAACCGTTTCTGGACCTTAATGAATTGAAGCTGCACATGCATTTCTCTCATGCCTTCGCACCTCTTAAGAGACTTGTTAATAATCGAAGAGAAAATGTCTTAAAAGTAGATGTAAGTGACATAACCTGCAAGATATGTTCAGAAAAACGTCCCAATTTGGTCGAACTCAAACGCCATCTCAAAGAAGTACACGAAAAACCAATAGATTTAGAAATCAAAGACAATATGATTCCGTTCAATCTTGAACTCGTAGACGATGCCTACAAATGCGTTATATGCGAACAAAATTTTATAAAAGTGAGAATTTTAGTTATACATATGAGTGAACACTTCAATAATTACAGCTGCGAGATATGCGGATCAGTCTTCATGACTTTACGGCTATTGAAGAAACATTTAGAAGTCCATGACTCTGGAAACTTTCCTTGCGATCGATGCAATAAAGTTTTCAGCACTCCTTATAAACGGACTTTGCATATACGAGGCGTGCACTTGAAGCAGTGTCCTAGAAGATGTCCAATGTGTCCAGAAAAATTTAATTCGAACTATAAAAGGACTATACACTTACAAGATGTCCATAATCAGGAGACAAGAGTGCATAAATGCAAGACTTGCGGCCGAGGATTCAATCTGAAGTATCATTTGGTCTGTCACGTACGGTCTGTCCATCTCCAGGAGCGGAATCAGCAGTGCGATGTGTGTCACCAAAGGTTTTGCAACAAGGAGTCTTTAAAGCGCCACAGGGTTATACATACAGGGGAGAAGAATCATAAATGTGATGTTTGTGGGATGGCGTTCTTGAGGAGAAAGAATTTGAAGGACCATTTGCGTTTGCATGATATCAGTATCATCCAGAAATCAAATTCGACGATCACTCTGAAAGACGAAGATGGAACAGAAATTAAACTTACAGTCCTCAAATATCCAATTTCTTTACAAACTCTAGAATACGAAACTCAAGATATTACCGCCAATCTCAACTTTAAGAATAAACGAAAAAAGAAAATTGGTAAAACGAAAGAGGTTAAGAAGAGCAACGTCAAGTTAGAAAACATATCTTTGTTGAAAGAACCAGTATCTATAAATAATGTTGATTGGAAAAACCATAATGAGCATGAAAATTCGGTGACATTTAATGTGAAAACTGTACAAGGATTTATCCGTGCGCCAACAAGACAACGAAGTGAAAACGTTGACTACGAGACTTGGAAACAGAATGCCTTAATCATCTTTGAAAACTCTTATGTCTATCCATTTATACATGCGGGTAATAAATACAAATGCGTCATCTGCTCCAAGCCTTTCCTAGACGCTAATATATTGAAAGACCATACTATAAACGAACATACAATCAAAGAAATGAAACGAGCATTAAATAACAGAGTTAGAGAGAAAAATCTAAAAGTAGACGTCACTTATCTCCAATGCAAGATCTGTTTGCAATCACTACCTGATCTGCAGAACTTAAAAACGCATTTACAGGAGCATGGCAAGAAAATACAGCCAGATTTGCAAGATAATATTATACCTTACAAGCTAGGAAGCGAGAATTTCGAATGTCAAcatatgaggatgcaTGGTCCTGTCTGGAAGTTCACGTGTTCGGAATGCGGAAGCGGGTTCCATAACAGAAATGATTATAATAAGCATATGAAGCAGTGGCATCCACAGTGGCAGTTTAAGACTATAGTTAAGAATTTTGGAAGTGAACTTATGAATTGA
- Protein Sequence
- MCPKVFTISGSDSEIPDTKRRIIPLFQVSYDRSLCRPLGTLIDFSRFRQKNIKAFSSPATRDFSPSRSPSPVYLRTEPTPLIDSTATLSVQTVKPKAKKTPDIRQNALAVFEFSTVYPFVYGSNKFKCFICSQPFLDLNELKLHMHFSHAFAPLKRLVNNRRENVLKVDVSDITCKICSEKRPNLVELKRHLKEVHEKPIDLEIKDNMIPFNLELVDDAYKCVICEQNFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCDVCHQRFCNKESLKRHRVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDISIIQKSNSTITLKDEDGTEIKLTVLKYPISLQTLEYETQDITANLNFKNKRKKKIGKTKEVKKSNVKLENISLLKEPVSINNVDWKNHNEHENSVTFNVKTVQGFIRAPTRQRSENVDYETWKQNALIIFENSYVYPFIHAGNKYKCVICSKPFLDANILKDHTINEHTIKEMKRALNNRVREKNLKVDVTYLQCKICLQSLPDLQNLKTHLQEHGKKIQPDLQDNIIPYKLGSENFECQHMRMHGPVWKFTCSECGSGFHNRNDYNKHMKQWHPQWQFKTIVKNFGSELMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -