Aocu019021.2
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- -
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000189.1:1264449-1280946[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.055 4.4 8.3 4.1 1 23 269 292 269 292 0.96 2 10 7.6e-05 0.0061 17.3 1.9 2 23 300 321 299 321 0.96 3 10 0.017 1.4 9.9 0.6 2 23 357 379 356 379 0.96 4 10 0.0015 0.12 13.2 1.0 3 23 383 404 381 404 0.97 5 10 4.4e-06 0.00035 21.2 1.8 1 23 410 432 410 432 0.98 6 10 1.4 1.1e+02 3.8 0.2 2 19 442 459 441 462 0.77 7 10 2.2e-05 0.0017 19.0 2.8 1 23 470 493 470 493 0.96 8 10 8.8e-06 0.0007 20.2 1.7 1 23 499 521 499 521 0.97 9 10 6e-05 0.0049 17.6 2.5 1 23 530 552 530 552 0.98 10 10 0.00013 0.011 16.5 1.4 1 23 558 581 558 581 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAACAAATAAATATCTGCGTTACCTGTCTAAGCACGGATCGTCATTTAGTCCCTGTGCGTAAAATAACATCTTTGCTACGTGAAATACATTTCGAAGAGCTACAAGAGTCCCCAGGTGGAGTATGTTGGGAATGCTGGAGTATCCTAACGAAGTTCTGCAGCTTTAAGAATAGAGCAAAGATAGCACAGAAGACCTTACTAAATACTACAGAGCATTTGAATATAAAATCTCTTACAACACTTGCTAAAACCAATATTTTATTAGATCACACATACGATTTTGTTTCGAAAAGCAACTGCGACACTAAGCTCAAAGTTGACCAAGATTCTATTAAAAAAGAAAACGTAGACCAAATTGATGATAATTTAGCAAACATTGATGAAAATTTAGACCACATTGACGATACTTTAGCAATAGATGAAGATCTAATTGAAAAACCGGAAAAATACGAAAACTTTTATTCAGAAGGTGATACAATAGAAATTGAAAAAAACGATAAGTTGCTCGGGAAACAAGAAAACTATTCTCAACATGAAAAAGATATATTTAATGTAGCAAATAAAAAAAATAATGAAACCGAAACTATCGAAACGAAACCTAACATAAACTTACCCACAAGAACTGTCACTAGACAAAAAAAAGATGGCGTCAGAGTTACCAAAAAAATATCACTTAAAGTTAGAGATACACATGATAAAGAGTTCCAAGAGAAGTTTGTACAAGTTGTTATGAGTGAGGAAGAGATGGCCAGAGTTAGAGAAGAGAAAAGAAATCATCCATCGTTTAGGAAACTTCCTCATATATGTCATGGTTGCGTACTTGGGTTTAGAAAGGAGGAGAAATACAGAAGCCATATAAAGAAGAAGCATGATGAGAGAATCGGCAATCTCATCTGCGAAGTATGCGGCGTCAGGTTTCGCCACAAACTAGCGTTAAACAAACATAAGAGAAAGCATTATGTAGTCTATAGATGTAAGCTATGTAAATATCAAGGGAATGACCTGCGTTCAGCTGTCAACCACTGTAAGCTCAAGCATGCAGCTGATAAACCTGACAGCATACACTGTTCACAGTGTTATTTTGTGGCCAAAAATTCACAAGCTCTGGAAGATCATATGCAAACGGAACATCAGTTCTGGTGCAACGAATGCGGAGAAAAATTCAAAATAAAGAGGAATATTACATTACATATGACTCGCACTCACGCCCCAAAACGTGCCTTTAAATGTGATATTTGCAAAAAAGGTTTCAAAACGAAGATGCAGCTAGAATCTCATCGTGCCAGACATAATGATAACATTGCGAAGAACCTCACCTATTGTCAGAAATGCGATATTCAATTCAAGAACATAGTCATATACAGAATTCATTTGAAGAATACGGCTAACCATTCCGAGGGATACACATGTTCAGAATGTAATAAAATATTCACGGCTAAAAGCTACTTGAAACAACATTACAACTACTATCATTTAAACAAAAAGCAATATAAATGTGAAATATGCAATAAGACATTCATGTCAAAATTTTCTTTAACAAATCACGAAGGAACACACCTCGGTAAAACCAGACCAAGAAAATATTCCTGCAACATATGTAAAAAGAAGTTCTATAATTCGACAGTACTCCGTAGTCACAGACAAATTCATTCGGACGAGCGCAAATACATGTGTGAAGATTGTGGTGACACTTTTAAGCAATCAGCTTGCTTGTACGCACACTTGCGGCTGAAGCACAGAGGTGGTGGGCGAAAAAGGAAGCGGGATTGCTGA
- Protein Sequence
- MEEQINICVTCLSTDRHLVPVRKITSLLREIHFEELQESPGGVCWECWSILTKFCSFKNRAKIAQKTLLNTTEHLNIKSLTTLAKTNILLDHTYDFVSKSNCDTKLKVDQDSIKKENVDQIDDNLANIDENLDHIDDTLAIDEDLIEKPEKYENFYSEGDTIEIEKNDKLLGKQENYSQHEKDIFNVANKKNNETETIETKPNINLPTRTVTRQKKDGVRVTKKISLKVRDTHDKEFQEKFVQVVMSEEEMARVREEKRNHPSFRKLPHICHGCVLGFRKEEKYRSHIKKKHDERIGNLICEVCGVRFRHKLALNKHKRKHYVVYRCKLCKYQGNDLRSAVNHCKLKHAADKPDSIHCSQCYFVAKNSQALEDHMQTEHQFWCNECGEKFKIKRNITLHMTRTHAPKRAFKCDICKKGFKTKMQLESHRARHNDNIAKNLTYCQKCDIQFKNIVIYRIHLKNTANHSEGYTCSECNKIFTAKSYLKQHYNYYHLNKKQYKCEICNKTFMSKFSLTNHEGTHLGKTRPRKYSCNICKKKFYNSTVLRSHRQIHSDERKYMCEDCGDTFKQSACLYAHLRLKHRGGGRKRKRDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01095252;
- 90% Identity
- -
- 80% Identity
- -