Basic Information

Insect: Amphipoea oculea
Gene Symbol: -
Assembly: GCA_945859585.1
Location: CAMAOF010000098.1:849440-855414[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.17 14 6.7 0.5 2 23 43 64 42 64 0.90

2 16 0.6 48 5.0 2.9 1 19 73 91 73 96 0.94

3 16 0.045 3.6 8.6 4.8 1 23 102 125 102 125 0.95

4 16 0.0032 0.26 12.2 2.0 1 23 127 149 127 149 0.97

5 16 2 1.6e+02 3.4 0.3 1 20 156 175 156 178 0.70

6 16 0.85 68 4.6 0.2 1 23 183 206 183 206 0.88

7 16 0.044 3.5 8.6 0.4 3 23 235 256 234 256 0.95

8 16 0.43 35 5.5 5.3 1 19 263 281 263 285 0.80

9 16 3.4e-06 0.00028 21.5 0.2 1 23 291 314 291 314 0.92

10 16 0.00018 0.014 16.1 0.2 1 23 323 346 323 346 0.94

11 16 0.044 3.5 8.6 0.2 3 23 353 375 351 375 0.90

12 16 0.63 51 5.0 0.9 3 23 383 403 383 403 0.96

13 16 0.034 2.8 8.9 0.1 1 20 408 427 408 430 0.92

14 16 0.00013 0.01 16.6 2.0 1 23 436 458 436 458 0.97

15 16 0.00037 0.03 15.1 1.5 1 23 464 486 464 486 0.98

16 16 8.7e-06 0.0007 20.3 3.4 1 23 492 515 492 515 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.17	14	6.7	0.5	2	23	43	64	42	64	0.90
2	16	0.6	48	5.0	2.9	1	19	73	91	73	96	0.94
3	16	0.045	3.6	8.6	4.8	1	23	102	125	102	125	0.95
4	16	0.0032	0.26	12.2	2.0	1	23	127	149	127	149	0.97
5	16	2	1.6e+02	3.4	0.3	1	20	156	175	156	178	0.70
6	16	0.85	68	4.6	0.2	1	23	183	206	183	206	0.88
7	16	0.044	3.5	8.6	0.4	3	23	235	256	234	256	0.95
8	16	0.43	35	5.5	5.3	1	19	263	281	263	285	0.80
9	16	3.4e-06	0.00028	21.5	0.2	1	23	291	314	291	314	0.92
10	16	0.00018	0.014	16.1	0.2	1	23	323	346	323	346	0.94
11	16	0.044	3.5	8.6	0.2	3	23	353	375	351	375	0.90
12	16	0.63	51	5.0	0.9	3	23	383	403	383	403	0.96
13	16	0.034	2.8	8.9	0.1	1	20	408	427	408	430	0.92
14	16	0.00013	0.01	16.6	2.0	1	23	436	458	436	458	0.97
15	16	0.00037	0.03	15.1	1.5	1	23	464	486	464	486	0.98
16	16	8.7e-06	0.0007	20.3	3.4	1	23	492	515	492	515	0.98

Sequence Information

Coding Sequence: ATGGCTTCACCGTCGCAGCCGGACGGGTTGGCTTCCCCGCCGCAGCCCGACGGCGCGGGCTGGCTGGAGCAGGCGGAGACCGTGCTGGGCCGCAAGCTCACGTCCATAGACTTGGTTGGCGGTATATACTGCAGCATTTGTCAGTCCACATTTGGTAACAAGAAGGATTATGACTCTCACTACGTGGACCACGACATAGGAGACGCAGACATAGGCTACACTTGTGTCGTGTGCCGCAAACAGTTCACCGGCTACCCAAGCTTCCGCAACCATTGCTACTTGATTCATGTTGCTAGAAACAAACATAAGTGCATACATTGCTCCAAAACATTTTCAAAACAGTCAATTCTGAACAGTCACATTGACACAACTCACAATTTTAAATGTGAACCTTGCCAAAAACAATTTCCATCTAAAAAGGAACTACACACACATCAAGTTATCCATGGCAAGGACAACCCTCCGTACCCTTGCCAAGAATGTGGGGAGACGATCGAGAGTATCGACATGTGCGAGTACCACATTGAAGAGCACTGCACAACTCTGTACTCGTGCCCCATCTGCAACGACGAGACCACAAACAACAAGCTGGATGCTGCCAAACATCTGACGAAACACTTTGGCGAAGTACTTACTGACGAATACGTTTCCGATTCCAAAATTGGTGAAGACTGCTCCATAGACATCCTTGGAGGAGTCCTCTGTAATTACTGCGACGAGTTATTCAAAAATAGAATAGAGTTTGACACACACTTTGCTACAGAACATGGTGACCAACCTCTGGTATACTCCTGCAATATTTGTGGGAAGCAGTATAACAAATATCATTTGTTCGGCAACCATTGCTACAATCATATGACCAAAGGTAGATTTGAATGCACGGACTGCGGCAAGTCTTTCCCTCGCCTGTCTCTCTTAGTGACTCACACGGAGGCCTACCACTCGTCCGTGGCGGTTGAAAAGCCGTTTCTATGCGGCGAGTGCGGGTACGGCTTCAAGTCGCCCAACCGCCTGCGCGAGCACACGCGCGTCGTGCACGAGACCAACACCATGCGCTGCATGGAGGACGGCTGCGATATGCTATTCGAGTCCCTAAAGGAGCTGCTACTACACCAGCGCTCGCACCGCTCGTGCCGCGAAAACTGGTGCCGGCAGTGCGGGCTGCAGTTTGTGTCGCTCGCTTCGTGCGAGCGCCACCTCGACGTGCACCGCAAGAAGCACTACGCCTGCCCCGTGTGCCGGCGCGCCTACCGCGAGAAGTACCTCATCCTCAAACACATACCGAGTCATTTCGAATGTGTGCTGCATGTCTGCAAAGTCTGTGGCAAGGTGTTCAACCTGCGCAGCCGTCTCGTGCAGCACTCTAAGACCCACTCCGACCTGCGCGCACACAAGTGCAACGTCTGCAACAAAGGCTTCTTGAAAGCCTCCATGCTTCAACAACATCTCAACATACACACTGGCTTCAGACCATACAAGTGCACCGAGTGCTCCAAAACCTTCGCCAGCTACCCCAACTGGCACAAACATATGCGTCGCATGCACAATATCGAAAAACAAGACATAAAGGAGAAGACAAACAAAGCTATCATTGCTCCTGAGCTAATATCACCACCCCCTGTCACTAGAATCGATAAACACGATACTAAAATGAAGATCGAATCAGGAATCGATTCAACGAGTTCGGAAATGTCACTCGAGACTTACTGTTTCGTTATGTCGGATGACAGCACGATGGATAGTATTGATCCGTCAATCATAGAGAAAGATTGGTGCATCTCGAATGAAAACTCTATTCTAGACGACAGTCTGCAATATACAGATATGCTGCCAGTAAACAACACTACATTTGATTTTGAAGTATCTCAGCTAGAAAGCGCGGTATCGTCGCAGCCGGTGGGCGTGCCGCGCGAGTACGGGCCCGAGTTCAACGTGTGCGCGCTGCCGGACGCGCTGGGCGGCGCCTGCATCGACCTGGACGACCACTACCTGCCGCACATCGACCCGCTGCTCACCATCCGCCGCGACCACTTCGTAACCCCGCCCGCCCAGCTCGCGCCGGCGTGGGAGCCACTCATCACCAAGGTATACAACGACACCGAACTCAACAGACTCTCCATTATCAACACCGACATATACTAA
Protein Sequence: MASPSQPDGLASPPQPDGAGWLEQAETVLGRKLTSIDLVGGIYCSICQSTFGNKKDYDSHYVDHDIGDADIGYTCVVCRKQFTGYPSFRNHCYLIHVARNKHKCIHCSKTFSKQSILNSHIDTTHNFKCEPCQKQFPSKKELHTHQVIHGKDNPPYPCQECGETIESIDMCEYHIEEHCTTLYSCPICNDETTNNKLDAAKHLTKHFGEVLTDEYVSDSKIGEDCSIDILGGVLCNYCDELFKNRIEFDTHFATEHGDQPLVYSCNICGKQYNKYHLFGNHCYNHMTKGRFECTDCGKSFPRLSLLVTHTEAYHSSVAVEKPFLCGECGYGFKSPNRLREHTRVVHETNTMRCMEDGCDMLFESLKELLLHQRSHRSCRENWCRQCGLQFVSLASCERHLDVHRKKHYACPVCRRAYREKYLILKHIPSHFECVLHVCKVCGKVFNLRSRLVQHSKTHSDLRAHKCNVCNKGFLKASMLQQHLNIHTGFRPYKCTECSKTFASYPNWHKHMRRMHNIEKQDIKEKTNKAIIAPELISPPPVTRIDKHDTKMKIESGIDSTSSEMSLETYCFVMSDDSTMDSIDPSIIEKDWCISNENSILDDSLQYTDMLPVNNTTFDFEVSQLESAVSSQPVGVPREYGPEFNVCALPDALGGACIDLDDHYLPHIDPLLTIRRDHFVTPPAQLAPAWEPLITKVYNDTELNRLSIINTDIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01527623;
90% Identity: iTF_00038100;
80% Identity: -