Aocu019035.1
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- ZFX
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000189.1:1504224-1519894[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.11 9.1 7.3 0.3 1 23 46 69 46 69 0.92 2 11 0.0049 0.39 11.6 0.1 1 23 76 98 76 98 0.98 3 11 0.77 62 4.7 0.9 1 10 102 111 102 125 0.77 4 11 0.18 15 6.6 2.1 1 23 132 154 132 154 0.82 5 11 4.5e-06 0.00036 21.2 1.1 2 23 159 181 158 181 0.93 6 11 6.9e-06 0.00055 20.6 1.0 1 23 187 209 187 209 0.97 7 11 0.0014 0.11 13.3 1.3 2 21 221 240 221 245 0.93 8 11 8.4e-06 0.00067 20.3 1.6 1 23 253 276 253 276 0.94 9 11 0.00094 0.075 13.9 0.2 1 23 281 304 281 304 0.97 10 11 4e-06 0.00032 21.3 2.8 2 23 312 333 311 333 0.97 11 11 4e-08 3.2e-06 27.6 1.4 1 23 339 362 339 362 0.97
Sequence Information
- Coding Sequence
- ATGTTTTTTTTTTATTTACAGCCGAAGCCTACGAAAAAGCGAGAAAAGAAGATCCTAACCATAGAGTTGACATATGAGGAAATGTTGTTAGAAAGAGATAAAGAATCGGCAAGGGACGCGTATACGAGGTCGGAATACAAGTGTGAAAGCTGTCTCATTGGGTTTACTTATATGAAGTCTTATACCGCTCATGTGGCGGCCAAGCATTCGGCGGAATTAGGCGATTACATGTGTCCTATTTGCAAAACGATAATACCATCAGTGGAATCATTTACAGCGCATTATAAAAGGCATATGAGAAGATATGAATGCAGTATTTGCCACAAAAGAACGTTGGACATCAAAGTGATGCAGCAACATTATTACTCGACGCATGAGATAACACTTAAGGAATATAAATGTAATGTATGTGGGAAAATATCTAATTCCATAGACACCCACCGCTACCATAAAGACACGCACAAAGCAAGAGTACAGTGCACAGAGTGTGACAAAACGTTCAGACATAGAGCAGGACTCAAGAACCATAGACTGGCAGTGCATGAATATCGGAACTCGTTTCCCTGCACGATATGTGACAAAGTGTTCCGATGGAAAACTAGTCTCAAGCGGCATTTAGAAAAACATGAAGTTCTGGGCAAGTCATCATCAGCTGCAGCATATTGTTCCATGTGCAACGTGAGCTTCTCGTCCATATTTTCGTACCAGCGACACATGAAAAATAGCCTCAAACATGTCTCACAGGATCAGCTCAAGTTCATCTGTGATCATTGCGACAAACGCTTCGCCGATAAGACGAAGCTAAGAGACCACATTGAGGAGAAACATCTATACAAGACTTATCAGTGTCAAATCTGTCTGAAGCCTTCTAAAAATCGCGTTGGCTTGGACCAGCATATACGTAATGTGCACAAAGGAAGACCAAATAATAAAATGTGCCATCATTGCGGCAAAGGATTTCCTACCACCGTACAGTTGGAGTCCCACATTCGTTCGCACACCGGAGAGAGACCGTTCACATGCGAATACTGCCCGACGACATTCTCACAGCAATCCAACTTGTATAAACATATTAGACAGGTGCATCTCAACATAAAATCCAAACGCTATCCCATGTGCAAGAAGAAAGAAGAAAAACTTCCAGAAGTGCCCATATTAGACCATGTTCAACCCATTGACCCATATAGGCCGGTTCCCATGTTACACTATACTGCTGAAAAAGTGTTTGGAATGTGA
- Protein Sequence
- MFFFYLQPKPTKKREKKILTIELTYEEMLLERDKESARDAYTRSEYKCESCLIGFTYMKSYTAHVAAKHSAELGDYMCPICKTIIPSVESFTAHYKRHMRRYECSICHKRTLDIKVMQQHYYSTHEITLKEYKCNVCGKISNSIDTHRYHKDTHKARVQCTECDKTFRHRAGLKNHRLAVHEYRNSFPCTICDKVFRWKTSLKRHLEKHEVLGKSSSAAAYCSMCNVSFSSIFSYQRHMKNSLKHVSQDQLKFICDHCDKRFADKTKLRDHIEEKHLYKTYQCQICLKPSKNRVGLDQHIRNVHKGRPNNKMCHHCGKGFPTTVQLESHIRSHTGERPFTCEYCPTTFSQQSNLYKHIRQVHLNIKSKRYPMCKKKEEKLPEVPILDHVQPIDPYRPVPMLHYTAEKVFGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00831496;
- 90% Identity
- iTF_00746055;
- 80% Identity
- -