Basic Information

Insect: Amphipoea oculea
Gene Symbol: prg
Assembly: GCA_945859585.1
Location: CAMAOF010000134.1:4023157-4024985[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.4 1.1e+02 3.9 3.6 1 20 178 197 178 201 0.83

2 10 0.0015 0.12 13.2 0.4 1 23 207 230 207 230 0.96

3 10 2.9e-06 0.00023 21.8 3.6 1 23 236 258 236 258 0.96

4 10 2.3e-07 1.8e-05 25.2 2.8 1 23 264 286 264 286 0.99

5 10 1.5e-05 0.0012 19.5 0.1 1 23 292 314 292 314 0.97

6 10 0.00087 0.07 14.0 3.1 1 23 320 342 320 342 0.97

7 10 5.2e-05 0.0042 17.8 1.5 2 23 441 463 440 463 0.95

8 10 4.7e-05 0.0038 17.9 1.1 1 23 469 491 469 491 0.95

9 10 2.7e-05 0.0021 18.7 3.3 1 23 497 519 497 519 0.98

10 10 0.003 0.24 12.3 0.0 3 23 528 548 526 548 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.4	1.1e+02	3.9	3.6	1	20	178	197	178	201	0.83
2	10	0.0015	0.12	13.2	0.4	1	23	207	230	207	230	0.96
3	10	2.9e-06	0.00023	21.8	3.6	1	23	236	258	236	258	0.96
4	10	2.3e-07	1.8e-05	25.2	2.8	1	23	264	286	264	286	0.99
5	10	1.5e-05	0.0012	19.5	0.1	1	23	292	314	292	314	0.97
6	10	0.00087	0.07	14.0	3.1	1	23	320	342	320	342	0.97
7	10	5.2e-05	0.0042	17.8	1.5	2	23	441	463	440	463	0.95
8	10	4.7e-05	0.0038	17.9	1.1	1	23	469	491	469	491	0.95
9	10	2.7e-05	0.0021	18.7	3.3	1	23	497	519	497	519	0.98
10	10	0.003	0.24	12.3	0.0	3	23	528	548	526	548	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATTATCGCTAATTTCCACACGCTCTGTCGACTGTGCCTGCACAAAAGTACATTCTCGACATCGATATTCGCAGCTGCGCCGGACGACGAAGCAAATGTTGCTTTAACCTCCAAACTAGCAGAATGTCTCGACTTGCAGATTGATCCTAATGATGGGCTGCCTACTAGGATCTGCTACAAATGCTTGTTCAAAGTTGATACATGTTCAAAATTTAAGCTACAGTGCACTCAAAATGAAACCAGGTTGAGACAAATCACTACAAGAGCTAATGAACTGGACAACTCTAATTCATCAGAACTTAGCAGCTATAACTATGGTTCACACTCTCAGGATGGACTTAAACCTAAACCTGAAGATTACATTGTTGAAGATAGTGTTGTGATGGTGGTTGATCCAAGCCTTGACTATGACTCCTCTGAGGAGTCTGAAAATATGGACCCCGTTGAACCAGAAGTTACTGAAAGAAACAACACCCCAGACGGAGAGCCAATGACTGAATCCTTTTTCAAAAATGTTTTCATGTGTCAATTTTGCGATCAAGCTTTTGTTTCACAAGAAAAATGTAAGGAACATGAACATGCTTACCATGATCCCAATTTACCATACAAATGTGTGGAGTGTAGTCTAGTCTTTGCTGAGCGAAGTCAATATGTGCAGCACACCAAACAAGTACATGGCAATGATAAACCCTACCACTGTCCAGAATGTGATAAGTGTTTTGGAAGACGCTCGGATTTAAGAAAGCACTCCATTGTCCACACTGGCATTAGGCCGTATCAATGTCAATATTGCTTGAAAAGCTTCTCCCGCAATACTAATCTTAGCAAACATCTGCGAATTCATGCTGGACACAAACCACATGTGTGCCCTCTTTGTCCAAGGAGCTTTGTGGCAAAAGGAGATTTACAACGTCATGTGCTTGTTCATTCAGGTATGAAACCATTTGCTTGTAGGAAATGTCACTTAACATTTGGTAGAAGAGATAAACTTATCAAGCATGAAATGCGTCATACTCCTATGAGCCCCAGCAAAACAAATCCAAATGCATTTATTTTGCCTGACCATGAACAAGATACTCATGATATGGTAGTAAATGTAAACCCTTTTAGCAATCTTATGACTTCTACACAGCTCCATCCAGATTCATCAAATACGGATTATGATCTACCGAGAGTCCCAGATCATATATCTGGAGAGAGCAGTTTTATGAAAGTTCAGAAAAATACTGCTGCAACAAATAAGACCACCCATCATTCCCCACCAAAACAGAAAGCTGCAGCAAATAAAAACAGGCCAAAAAATATTAAATGTCATCAGTGCCCCAAGAGGTTTAGCTCTTTAGATTCCTACAAAACACATGTGTCTATTGCACATATTGGATCCAGGGTCTTCCAGTGCAAAATTTGTTTCAAGAAATTCCCTCGCAAAAGAGAGTTGGACCGTCATGCAGCTCTACATTCTGGTATGAAGCCATTTTCATGTAGTCAATGTGATAAAAAGTTTACTAAAAAGGACAAACTTGATAAACATGAGCAAACTCATGAATGCTTGGTTGTGAATATGCCTTGCATTGAATGTGGTGCCACCTTTGAAAAGAAACCTGATTTAGTTGCACATATAAAATCACATTTTACTGAAAATTTTGATGATAAGATGACAGAAGCTGAAATTAAGAAAGAAGAGGACCCTGAATTTAATTTGGATGACAATTTCTATGACCTTGAAACTTGA
Protein Sequence: MEDSYIIANFHTLCRLCLHKSTFSTSIFAAAPDDEANVALTSKLAECLDLQIDPNDGLPTRICYKCLFKVDTCSKFKLQCTQNETRLRQITTRANELDNSNSSELSSYNYGSHSQDGLKPKPEDYIVEDSVVMVVDPSLDYDSSEESENMDPVEPEVTERNNTPDGEPMTESFFKNVFMCQFCDQAFVSQEKCKEHEHAYHDPNLPYKCVECSLVFAERSQYVQHTKQVHGNDKPYHCPECDKCFGRRSDLRKHSIVHTGIRPYQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLQRHVLVHSGMKPFACRKCHLTFGRRDKLIKHEMRHTPMSPSKTNPNAFILPDHEQDTHDMVVNVNPFSNLMTSTQLHPDSSNTDYDLPRVPDHISGESSFMKVQKNTAATNKTTHHSPPKQKAAANKNRPKNIKCHQCPKRFSSLDSYKTHVSIAHIGSRVFQCKICFKKFPRKRELDRHAALHSGMKPFSCSQCDKKFTKKDKLDKHEQTHECLVVNMPCIECGATFEKKPDLVAHIKSHFTENFDDKMTEAEIKKEEDPEFNLDDNFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00185530;
90% Identity: iTF_00726723;
80% Identity: -