Basic Information

Insect: Amphipoea oculea
Gene Symbol: -
Assembly: GCA_945859585.1
Location: CAMAOF010000109.1:236169-248289[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.6 6.1e+02 1.6 0.8 2 19 267 284 266 288 0.72

2 13 0.00058 0.047 14.5 2.4 1 22 293 314 293 317 0.92

3 13 0.00072 0.058 14.2 3.5 2 23 447 469 446 469 0.94

4 13 0.0061 0.49 11.3 0.0 1 23 475 497 475 497 0.95

5 13 0.02 1.6 9.7 0.1 1 23 507 530 507 530 0.89

6 13 2e-07 1.6e-05 25.4 3.5 1 23 535 557 535 557 0.98

7 13 0.00029 0.023 15.5 0.9 1 23 563 585 563 585 0.95

8 13 9.5e-05 0.0076 17.0 4.9 1 23 591 613 591 613 0.98

9 13 9.5e-08 7.6e-06 26.4 0.4 1 23 619 641 619 641 0.98

10 13 0.0027 0.22 12.4 4.1 1 23 647 669 647 669 0.98

11 13 0.0001 0.0084 16.9 0.2 1 22 675 696 675 696 0.95

12 13 5.6e-05 0.0045 17.7 0.8 1 23 703 725 703 725 0.98

13 13 5e-06 0.0004 21.0 3.6 1 23 731 754 731 754 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.6	6.1e+02	1.6	0.8	2	19	267	284	266	288	0.72
2	13	0.00058	0.047	14.5	2.4	1	22	293	314	293	317	0.92
3	13	0.00072	0.058	14.2	3.5	2	23	447	469	446	469	0.94
4	13	0.0061	0.49	11.3	0.0	1	23	475	497	475	497	0.95
5	13	0.02	1.6	9.7	0.1	1	23	507	530	507	530	0.89
6	13	2e-07	1.6e-05	25.4	3.5	1	23	535	557	535	557	0.98
7	13	0.00029	0.023	15.5	0.9	1	23	563	585	563	585	0.95
8	13	9.5e-05	0.0076	17.0	4.9	1	23	591	613	591	613	0.98
9	13	9.5e-08	7.6e-06	26.4	0.4	1	23	619	641	619	641	0.98
10	13	0.0027	0.22	12.4	4.1	1	23	647	669	647	669	0.98
11	13	0.0001	0.0084	16.9	0.2	1	22	675	696	675	696	0.95
12	13	5.6e-05	0.0045	17.7	0.8	1	23	703	725	703	725	0.98
13	13	5e-06	0.0004	21.0	3.6	1	23	731	754	731	754	0.96

Sequence Information

Coding Sequence: ATGGAAGTAGTTCTTTACAATTCTAATGTTTGTCGATTATGTGGGGAAGAAAATGATAATGGAAATCTATTATATTCGTGTGAAGAAAATAGTCAAAACTTATGTGAAGTGATTAACACATATTTGCCAATCAAGGTTGCTGATGATGGGCAACTGCCTCGAACCATCTGTCCAGGATGTACCATACAGCTGGAAGCCACCGTAGAATTCCTAACACTCATTATAAACGGACAAAAAGTAATTCGTGAACTTCATCTCAGAGAGAAAGAATACAAGAGAACTGTGTTCAATCCCCCTGCGGAACAGGAAATTATAACGGATAAGATAATTTATGAAGTTAATACCAGCGATGGAGTATACCAAGTGGAACACCCAATTTCCTTACAAGTGGCTGGTCTTGAAAAACCAAAACGCAAACGTGGCAGACCTCCTAAAAAGCCTAAGACTCCTGAGGAGTTAGCCAAGGAAGCTGCTGCAAAGGAGCAGGCTGCAGTAAAGCGTCCTAAAAAACAAGAAAGAGAAGATGAGCCAACTGGAAAACGAAGAAGGAAAACTCCGACTAGGTTTAGAGAAGCCGTTCAGGGTAAAGAGCTTGAGAGGATATTCAAAGAGGAAGGAGTAACTGACGGAGATGAGAGTGAGCCTGATGTGAAGATAGAACAGCACCTAGACTTGAAACCACCCGTACCTAAAGAACCAGAAGTTATTGGTCATCTTGAGGATTCTGGTGAACTCGTTGTTGTGGTCAAGGGCAAAGGCCGTGGAAGGCCTAAAGGTCCAATGACACCGACCCGCAAAGAATGCGCAATATGCGGCATGGAGTTCACCTGCACTGGCCGATACATGTCGCACGTGGCCCAACATGGGCCGGTGCTGTACCAGTGCGGGCAGTGCTCCGAGACGTTCACCACAAGGTTACACTTCAACAACCATCAGAAGGAACTGGGACATACTGGACAGAATATTATACCATGCAAGAAGAATGTTGAGAGAATTAGGGCAAAGAAAACCGACAAACCAAGAACTGAAACAATAGTGATACAAGATGACCCTCAACCGCAAACAACGAAGTCTGATACTGTACAAATATTAGAAGATGTGATATTACCTCATACTATAGCAACCTCCTTGCCAGATTTAAATCCTCAGCCAATAGTTATTGAGAATGCAGTGAATGAGTCAGAGTTTCTGAAGGCTGGCCCTGCCGTTGAGATTACCTCTAGTCCTAGTGTTGATAGTGATGTTAAAATTGTTGATTCGACCACGGACGCCACTGTGACAGAGAAGTCAGATGATGTAGAACTAGCAGAAACGACACCGTCCGGTAAACCAAGACTGAAGTGTAACCACTGTGACAAGACTTTCAGTAGCAAACAGAGCAAATCATTACATATCAAGGCTTCGCATCAAGGCGAGCGTCCATACGTATGCGGTGAATGCGGCTCGCGGTTCGCGTATCCACGCTCGCTCGCGTTACATGCTGTCTCGCATCGACGACGCGCCGGCAATTCTAAGGGCTACGCTTGTGATCTGTGTGGGAAGGTCCTCAACCATCCATCGTCGGTAGTATACCACAAAGAAGCAGAGCACGCGGGCCAGCGATACGTGTGCAACAAATGCGGCAAGTCGTTCAAGCACAAACAGTTGCTGCAACGACACCAGCTAGTGCACTCGCAGGACAGGCCTTATAATTGTAAGTTATGCAGCGCATCATTCAAGACGAAGGCGAACCTGCTGAACCACTCGCTGCTACACACCGGCGTCAAGAAGTTCTCGTGTGAGATATGCAAGCACAAGTTTGCGCACAAGACTAGCCTCACGCTGCATATGAGGTGGCATACTGGTCAAAAGCCCTACTCCTGCAACGTTTGCGGCAAGAGCTTCAGTCAGAAAGGCAACTTGTCCGAACATGAGCGCATCCACACCGGGGAGAAGCCCTTCCAGTGTTCTCTGTGTCCGCGCAAGTTTACCACCTCCAGCCAACATCGGTTGCACGCGCGGCGACACAACTCTGATAGACCGTTCACTTGCGCGCATTGTGGGAAGAGGTTCGTGTCGCGCGGCTCGTGGGCCGCACACGTGCGGCGCGAGGGCGGGGGCCGCACGCACCGCTGCGGCGAGTGCGGCCGCACGTTCGCGGAGCGCTGGCCGCTACTGAAGCACCTGCGCAAGCACTCGGGCGAGCGCCCCTTCCGCTGCCCGCACTGCCCCCGGGCCTTCGCCGACTGCTCCAACCTTAATAAGCATAAGAAGCAAGTCCACAAACAGATCAGCTTACTGGCGACCGCGAACCAACCGCCGGCGCATACACCCATTCCTCTAAAGATAGAAGAACCAGACTCCCCGCTCATACAGCTAGAGGAACAGACTGTTTCCCTCCCGGAGACATCTCCCGTCAAGTTACTGGAGGAAGCCACGGAAGACGAGTTGGAAGAGAGAGTTATATACGTGACCTATGATGTGGATGATGCTGAATCACCTGCCTTCCATATATTAGACCCTGAACAGGCAGCAACTCTAGAAGACAGCAAGGTGCTAACAACATGCGAGCTATACTCGGGTCCCTCCCTCCTCGTCCCGCAGCCCGAATACGAGCAATTAGAGCTGGAACACGAGCAATTGGAGCTTGAACATGAGCAGCTCGAGCAGGAAGAACTCGAGCAGCTGCCTGAAGAGCTTGTGTTGGAAGGACATGATCAAAATATGCCTGTAACAGATGAGCAGGGTAATCCGCTACATTTCACCATGCAGGATGGCACACGACTCGCCATCACTTCAGCCGATGGAAAGTCTTTGCAAGTGATAACTCACGATGGTCAAACTATACCTGTTGAGATTAACGGATACGCAGATGAGGAGGAGGTAGACAATCCCGACACAATCGTCCACCAGCTGAACCTACAGAAGAGCATCGACTCTAACGTGTCGTCGCCTGTTACACACTACTTTACTATTGTTTAA
Protein Sequence: MEVVLYNSNVCRLCGEENDNGNLLYSCEENSQNLCEVINTYLPIKVADDGQLPRTICPGCTIQLEATVEFLTLIINGQKVIRELHLREKEYKRTVFNPPAEQEIITDKIIYEVNTSDGVYQVEHPISLQVAGLEKPKRKRGRPPKKPKTPEELAKEAAAKEQAAVKRPKKQEREDEPTGKRRRKTPTRFREAVQGKELERIFKEEGVTDGDESEPDVKIEQHLDLKPPVPKEPEVIGHLEDSGELVVVVKGKGRGRPKGPMTPTRKECAICGMEFTCTGRYMSHVAQHGPVLYQCGQCSETFTTRLHFNNHQKELGHTGQNIIPCKKNVERIRAKKTDKPRTETIVIQDDPQPQTTKSDTVQILEDVILPHTIATSLPDLNPQPIVIENAVNESEFLKAGPAVEITSSPSVDSDVKIVDSTTDATVTEKSDDVELAETTPSGKPRLKCNHCDKTFSSKQSKSLHIKASHQGERPYVCGECGSRFAYPRSLALHAVSHRRRAGNSKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQDRPYNCKLCSASFKTKANLLNHSLLHTGVKKFSCEICKHKFAHKTSLTLHMRWHTGQKPYSCNVCGKSFSQKGNLSEHERIHTGEKPFQCSLCPRKFTTSSQHRLHARRHNSDRPFTCAHCGKRFVSRGSWAAHVRREGGGRTHRCGECGRTFAERWPLLKHLRKHSGERPFRCPHCPRAFADCSNLNKHKKQVHKQISLLATANQPPAHTPIPLKIEEPDSPLIQLEEQTVSLPETSPVKLLEEATEDELEERVIYVTYDVDDAESPAFHILDPEQAATLEDSKVLTTCELYSGPSLLVPQPEYEQLELEHEQLELEHEQLEQEELEQLPEELVLEGHDQNMPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITHDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKSIDSNVSSPVTHYFTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00746034;
90% Identity: iTF_00449497;
80% Identity: -