Aocu019941.1
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- -
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000217.1:677674-681715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.089 7.1 7.6 0.5 2 23 33 53 33 53 0.97 2 13 1e-05 0.00082 20.0 1.2 1 23 59 82 59 82 0.95 3 13 9.9e-06 0.00079 20.1 3.2 1 23 88 110 88 110 0.96 4 13 3.9e-05 0.0031 18.2 0.1 1 23 116 138 116 138 0.98 5 13 7.4e-06 0.00059 20.5 0.1 1 23 143 165 143 165 0.97 6 13 0.0023 0.19 12.6 4.3 5 23 174 192 171 192 0.96 7 13 0.67 54 4.9 1.8 1 23 252 273 252 273 0.91 8 13 0.038 3.1 8.8 1.4 2 23 830 852 830 852 0.96 9 13 6.7e-06 0.00053 20.6 3.2 1 23 858 880 858 880 0.97 10 13 1.3e-05 0.0011 19.7 2.4 1 23 886 908 886 908 0.98 11 13 0.00055 0.044 14.6 2.6 2 23 915 936 914 936 0.96 12 13 3.2e-06 0.00026 21.6 0.7 1 23 942 964 942 964 0.98 13 13 0.00016 0.013 16.2 1.9 1 23 969 992 969 992 0.96
Sequence Information
- Coding Sequence
- ATGCCAGAAGAAAGCGTCCAAGAAGACGACAAAACTAAAGTCGAAATTATCGAGAAACCGGAGTTTACAATAAGCGAGAATGGAAAGCGATACGCGAAGTGTGGCGTGTGTCACAAGAGTGTGTCGGTGGGGGGGTGGACGCGGCACATGCGCGCGCACCGCGGCGAGAGACGCCACAGCTGCCACACGTGCGGACTCGCCTTCAACGACAGCGGCAACCTGGCGCGCCACACGCGGGCCATACACTCCAAGCAACGCCCACACGCCTGCCCAACGTGCGCCAAAACATTCTCACGGAAATCTCACCTGGAAGACCATGTAAAGTCTCATTCAGAGAGTAGGACATTCGTGTGTGATATATGCGGGAAGGGATCCAAATCAAGCGCAGCACTACGCATGCACGCGCGCAGGCACGATGCATGCCGGTTCCCGTGCGTGCAGTGTGGCGCACGGTTTAAGCGGCGCGGTGAGCTGAACGCGCACATGTCTGTGCATACTGGGGAGAAGGCACATGTCTGCCACTGCGGGAAAACTTTCCGATTGCGAACTCAGCTGACAGCACATACTAGAGTGCATAAAAAAACACGAGAGCAGGAAATGGAAGAGCTAACCAATGCTAGCAACACACTAGGGTCGAAGCCTGAGTTCTCTCGTCCGCAACCGCAGCAATACCGCACATGCGTGTACTGCGCGAGCACGCACCCCGTCGCCTCCTACCAAAAGCACCTCGTCGTGGAGCACTCCCACCGGTTGTTCCACTGCGAGGAGTGCGACACCTTCGTGGACAGGAAGGACTTCGTCGTACATATGTCCTTCCACGCCCTACACTTCACCGCAAAGGGCATTACCAGAAAGAAATTTAAGAAGAAGGAAGATACTGTCAGGCAGATTCCCAGCACAGTGCCCCCAGCCCGTGCTCCACAGTGTCCACCGAAAACCCAAAGTCCACAGTGTCCACCGAAAACCCAAAGTCCACAGTGCCCACCGAAAACCCAAAGTCCACAGTGTCCACCAAAAACCCAAAGTCCACAGTGCGCACCGAAAACTCAAAGTCCACTGTGTCCACCGAAAACCCAAAGTCCACAGTGTCCACCGAAAACCCAAAGTCCACAGTGTCCACCGAAAACCCAAAGTCCACAGTGCGCACCGAAAACCCAAAGTCCACAGTGTCCACCGAAAACCCAAAGTCCACAGTGCGCACCGAAAACTCAAAGTCCACTGTGTCCACCGAAAACCCAAAGTCCACAGTGTCCACCGAAAACCCAAAGTCCACAGTGCGCACCGAAAACCCAAAGTCCACAGTGTCCACCGAAAACTCAAAGTCCACTGTGTCCACCGAAAACCCAAAGTCCACAGTGTCCACCGAAAACCCAAAGTCCACAGTGCGCACCGAAAACCCAAAGTCCACAGTGTCCACCGAAAACCCAAAGTCCACAGAACGCACCGAAAACCCAAAGTCCACAGTGTCCACCGAAAACCCAAAGTCCACAGTGTCCACCGAAAACCCAAAGTCAACAGTGCGCACCGAATACCCAAAGTCCACAGTGCCCACCGAATACCCAAAGTCCACAGTGCCCACCGAAAACCCAAAGTCAACAGTGCCCACCGAATACCCAAAGTCCACAGTGCCCACCGAAAACCCAAAGTCCACAGTGCGCACCGAAAACCGAAAATTCACAGTGCTTACCGATAACCCAAAGTCCACAGTGCGCACCGAAAACCGAAAATTCACAGTCCTTACCGATGACCCATAGTTCACAGTGCACACCGAAAACCGAAAATTCACAGTGCTTACCGATAGCCCAAAGTCCACAGTGCGCACCGAAAACCGAAAATCCACAGGCTTCATCGAAAACCCAGACTCCACATTGCGCACCGAAAATTGAAAATCCACAGGCTTCACCGAAAACCCAGAGTCCACATTGCGCACCGAAAATTGAAAATCCACAGGCTTCACTGAAAACCGAAGGTCCACAGTACGCACCGAAAATCGAAGGGCCACAGTACGCACCGAAAATCGAAAGTAAACCAATCATTAAAACAGACGACATAAATCCTCCCGTGGTGGTTAAAACCAAAACGAGTGTCCAAGAGAATGAGTTTTCAGACCACAGTGATTTGGACGGCTTCGAACCTCTACCTGAGTCAGTGTTCGAAGCTATAGAGGACTCACAAGACGGCCAGTATTCAGCAGATAATATTACTGACACGCCTGAGAATCAGCCACACAGAGACAAGTCCAAAGTATCTTCCCAACCCGAAAACAATGATTTAAGTACTCCTGCCCCGAGTTTGGCGAAAAAATATAAATTTAATAATTGTTCAGTAGTTATAAAGCCAATCAATATAAATAATTGTGCCCAAATGATTGTCGCAATTAAAAATATTAAAGTAAACAACAATCCAGCCACTCCCCCACAAACTACTGACGCTTGTACTAGTGGTAATCACCCGACTGACGAAGAGAAGAGGAATCAGAAGACACGAAAGTGTCCCTTCTGTCCTAAAGAATGCAGAGCGGCGTCCAGCTATTTCTACCACCTGAAATACATCCACAAAAAAATCAAGGAACACGAATGCGAAGTGTGCGGCAGAAAGTTCAACACCAGATCCTGCTTGACGCAACACATGGCCATACACGCTGCACAGTACGAGTTCGAATGCCAGCAGTGTCAGAAACAATTCAAGACTAAAGCGAGCCTTTACATTCACCAGCAGACGCATAGCGATAAGAAGTCGTGGTCGTGCAGCCACTGCGAGACGTCGTTCAGATGGAAGGCGCAGCTGCAGAGACACATGACGAGGCACGCGGCGGAGAAGGGGCACGTTTGTGAGACGTGCGGTCGCGGGTTCAGCGTGCGGAGCGATCTGCTGCGGCACGCGCGCACGCACAACGCAGGGAGCTTCACTTGTGACAAATGTGGACAGAAATTCGCTCAGCTGCGGTATTTGAAAGTGCACACTACGAAGCAGCACTCGACCACTGTTAGGAAAGGATCTAAGTAA
- Protein Sequence
- MPEESVQEDDKTKVEIIEKPEFTISENGKRYAKCGVCHKSVSVGGWTRHMRAHRGERRHSCHTCGLAFNDSGNLARHTRAIHSKQRPHACPTCAKTFSRKSHLEDHVKSHSESRTFVCDICGKGSKSSAALRMHARRHDACRFPCVQCGARFKRRGELNAHMSVHTGEKAHVCHCGKTFRLRTQLTAHTRVHKKTREQEMEELTNASNTLGSKPEFSRPQPQQYRTCVYCASTHPVASYQKHLVVEHSHRLFHCEECDTFVDRKDFVVHMSFHALHFTAKGITRKKFKKKEDTVRQIPSTVPPARAPQCPPKTQSPQCPPKTQSPQCPPKTQSPQCPPKTQSPQCAPKTQSPLCPPKTQSPQCPPKTQSPQCPPKTQSPQCAPKTQSPQCPPKTQSPQCAPKTQSPLCPPKTQSPQCPPKTQSPQCAPKTQSPQCPPKTQSPLCPPKTQSPQCPPKTQSPQCAPKTQSPQCPPKTQSPQNAPKTQSPQCPPKTQSPQCPPKTQSQQCAPNTQSPQCPPNTQSPQCPPKTQSQQCPPNTQSPQCPPKTQSPQCAPKTENSQCLPITQSPQCAPKTENSQSLPMTHSSQCTPKTENSQCLPIAQSPQCAPKTENPQASSKTQTPHCAPKIENPQASPKTQSPHCAPKIENPQASLKTEGPQYAPKIEGPQYAPKIESKPIIKTDDINPPVVVKTKTSVQENEFSDHSDLDGFEPLPESVFEAIEDSQDGQYSADNITDTPENQPHRDKSKVSSQPENNDLSTPAPSLAKKYKFNNCSVVIKPININNCAQMIVAIKNIKVNNNPATPPQTTDACTSGNHPTDEEKRNQKTRKCPFCPKECRAASSYFYHLKYIHKKIKEHECEVCGRKFNTRSCLTQHMAIHAAQYEFECQQCQKQFKTKASLYIHQQTHSDKKSWSCSHCETSFRWKAQLQRHMTRHAAEKGHVCETCGRGFSVRSDLLRHARTHNAGSFTCDKCGQKFAQLRYLKVHTTKQHSTTVRKGSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -