Aocu012371.1
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- -
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000107.1:2407534-2408430[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-07 0.00012 22.0 0.0 10 38 2 30 1 36 0.88
Sequence Information
- Coding Sequence
- ATGGCAGCCGTGCAAAATGGACTACTATCAGAGCGTGCAGCAGCTATTCAGCACGGGATACCGAGAAGAACCCTGAAAAACCATTTAATGAACCGAACAAACGCAGAAGATTCGATTCCTTCATATTCAGCATCACCATCTTTATTGACAGAAGCAGACTATTCATTGCCGGTTTTGTCCAACTCTAATACAACGACGAATCATCGTTTAGTCGATTACAGCTCATCAGATTCTGGCAGTATTATACAAGAACCACCTATTCAATTACAAGAAACAAATAACATTACAAGGCGACCAATTGTTTATAGCTCAAATACCGATACTTCTGTTGAAGACCTTATGTCTCTTTTAGCGAATTATCACAATAGGCAAGATAGCCAAAACTTATACAGCCCCACTCCATCAGAAGACCAAAATGCAGTTCTTCCATTGATGCAAGAATATACGCCAGAAAAAGGAATCAGCCACGGTAGTTACATACATAATGTGGCAAGGCAACGATCTGATAGTTCGTCATCAGAGGACTCAGAGGATAATATACCATTACAGAATCTTAGACAGCAGGATAAAAGTTTGAAATCTCCTTTCCAACAGCTAATACCAACTCCAAATTATGCGGTGGTGAAGCAGAATAAACCAAGACGGAAAGCTATTAACTACAAAGGCCAGCGGGTTACTAGTTTACTAGAGACTTATTTTTGGAAAGAGAGGAAAAAAAGAAAAGACAAAAGAGACAGCAAACTCCTAAAAGAGGCAAAAAGAACAAAGAAAATAAAAAAAACAAAGGGAAACCTGATGATACGTGGTATTGCTACGCATGTCATACAGAAAGGATCCAAGATATGCGACAATGTCAAGTGTGTCAGAAATGGTACCACGACCAATGTGTTGGCCTAA
- Protein Sequence
- MAAVQNGLLSERAAAIQHGIPRRTLKNHLMNRTNAEDSIPSYSASPSLLTEADYSLPVLSNSNTTTNHRLVDYSSSDSGSIIQEPPIQLQETNNITRRPIVYSSNTDTSVEDLMSLLANYHNRQDSQNLYSPTPSEDQNAVLPLMQEYTPEKGISHGSYIHNVARQRSDSSSSEDSEDNIPLQNLRQQDKSLKSPFQQLIPTPNYAVVKQNKPRRKAINYKGQRVTSLLETYFWKERKKRKDKRDSKLLKEAKRTKKIKKTKGNLMIRGIATHVIQKGSKICDNVKCVRNGTTTNVLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00071356;
- 90% Identity
- iTF_00071356;
- 80% Identity
- -