Aocu016237.1
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- -
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000148.1:705882-709255[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-07 3.5e-05 23.8 0.1 4 37 16 50 15 57 0.85
Sequence Information
- Coding Sequence
- ATGCCAAAATATAAACGAATAAAAGAGACGAAGTATTCATTAGCTGATCTAATAGAAGCTGTCGAAAATGTACGACAAAAAAAAATTAATAGCTACCAAGCCTCCGTAAAATACGGAATACCAAGGTCAACCATTATTCACCGTTTATACGGAACACGCGGTGCCAAACAGCCAACGCCTGGCAGACCTACTGAATTGTCAAAAGAGTGGGAAACTAAAGTAGCTTCTAATCTCCATGTGATGGAAAAATGTGGGTATCCATTAACCTCCAAGGAAGTAAAAATATTGATATCTGAGTATATTCGAAGGAACGGAATCGTTACAAGATTTAAAGATAACTATCCTGGGAAGGAATGGTTTAGAGGATTTAAAAAACGAAACAAATTAAGTTTGAAAAAGCCACAGTCTGTAGAAATAGCTCGAAAAAAAGCATGTGATCCTTTCATAGTTAACGATTATTTCGATATGTTACAACGAACAATACAAGAGTGTGGTTTGGCTGACAAACCGCAATGTATATATAATTTGGATGAAACCAGCTTTTGTAGTGACCCCACCAAAACTAAAGTTGTGGGTCTGATGGGGTTTCCCTCTACTAGAACGACAGGCTCTCCTGGGAGGAATAACACCACTGTGCTCTTAGCTACGAATGCACTTGGCAAAAAGATCCCACCCTTAATAATATTTCAAGGGAAACATCTGTGGAGCGAGTGGCTGTTTAAAAATGATAACATTCATACAGCTTACGCTGTCAGTAAAAAAGGGTGGATGGAGACCACCATTTTCGAACAATACATCAAAGCCGTTTTTTTGCCAGCTATCGGAGCAGAACGACCAGTCTTATTGGTCTATGATGGTCATAAGACACATGTAGATTTGAATGTCATAGACCTTCTAGTTGCCGAAAACATTACGGTTCTTAAACTGCCGGCTCACTCATCCCACATACTGCAGCCATTAGACTGTAGTACAATGAAACCTATGAAAGACAAATGGGACAGCGAACTTGTGAAATGGCAAAGACTCCATGTGGGAGCAAAACTCCCAAAACAAGAATTTGCCAGAATCATAACTAATATATGGGATGATTTAAATCCTGTTATCATTCAAAATGGCTTCAGGAAAGCGGGCATATGCCCTTTGAACAAAGATGCAATCCCAAAAGAAAAATTCGACAGTCTGGCATGGTCAAGATGGGAAGAACACCAGCAGAAAAAAAAACAGCTTCGTAATGATACTGATCACAATGGTGAAGAAAATGTTGAAGGAAGTCACACCAAGAAAGATAACAGTCAGAAAGAACATAAAGTACCAACACTAATAAGTGTATGCCTTAAAACAATTAACAGTGAGATACGACGATTGCCAGACGAAATTGATAAGGCTATTGCAAACATTACACGGGATATGAAGAAAAAGCTACCGACAGAAAATGGTACAAAGGCTGATATGAACACGTACTCAGGTACTCGGGTTGAGTTTCAAAAGTGGGAGACTGTAAAGGACCCTAAAACTTTCATACTTTCACGTCCTAATAATGCCAATACCAATGCCAACAGTTATTCTTGTAAAGTAAAAATATTGGATAATGTATTAGTCAGCTCAACAATAAATAAAAGCAAAGAAGAAGAACGAGTTTCATTCGAAGAGCTACTATTAAAAACTATTTCACGTAACGACATACCTAAAACTTCAAAGAAACGGATAAGTCAAGGAAGCGAAATACTAACTTACAAAGATGCACTTCATCGTCTGAAAAATGAGAAAGAAAAAAAGGAAAAAGCAGAAGAAACTAAACGGCTAAAAAAACTGAAAAGAGCAAGTTATAATGAGAACAAAAAACCACTGATAAATAAGTCCAAAGCAAAGAAAAATAAAAGGAAAAAGATATTAGACTCAGACAGTGAGAGTGATTGTTCATATACTTCAATTAATTCTTCAGAAGATGAAGGCACTGAAGTTTTTTTTCGAAATATTTTGGAAGAAAGCATTGATGAAGATTTGCAGGAGCCATTACCATTATCTACTAGACAAGGACAAGAAGAAAATAGACCTAAAATAAAAAGTGAAAGATTGAATAAAGGGCAGAAAAAAACATTAAAGCAGAATGAAAAGGCGGGTAGTTTATATGAACATTCTACTGTTTTGGAAGAAAGGTTTGACGAAGATTCTGATGATCCTTTACCATCTACTTCTAAAGGAAAAATGAAAAAGGAAAAAGCAGAAGAAACTAAACGGCTAAAAAAACTGAAAAGAGCAAGTTATAATGAGAACAAAAAACCTCTGATAAATAAGTCCAAAGCAAAGAAAAATAAAAGGAAAAAGACCTTAGACTCGGACAGTGAGAGTGATTGTTCATATACTTCAATGAATTCTACAGAAGATGAAGGCCCTGAAATTTTTTTTCAAAATATTTTGGAAGAAAGCATTGATGAAGGTTTGCAGGAGCCATTACCATTATCTACTAGACAAGGACAAGAAGAAAATAGACCTAAAATAAAAAGTGAAAGATTGAATAAAGGGCAGAAAAAAACATTAAAGCAGAATGAAAAGGCGGGTAGTTTATATGAACATTCTACTGTTTTGGAAGAAAGGTTTGACGAAGATTTTGATGATCCGTTACCATCTACTTCTAAAGGACAAAAACAAAAGACACCTAAAATAAAAAGCGAAAGAGTGAAGGAAAGAAAGACTTACACTGCCAAGAAGAAAATATTTACACAAAAGGAAAATAAAATGCCACAACCACAAGCATCTGAGGTAAAAAAAAAAGAAGATCTCGACGTGGGTGACTTCATTTTGGCTGGATTTCGGTCGACTAAAGGCAAAAGGACGTATAAATACGTTTGTCTTATTGAGGATATTAACCAAGAAAAAATTGTAGTCAAAGGACTCAAATCTAAAAAAGATAATAGAGAATTCAAAAGTTCGTTGAAAACGACATTTCCATAA
- Protein Sequence
- MPKYKRIKETKYSLADLIEAVENVRQKKINSYQASVKYGIPRSTIIHRLYGTRGAKQPTPGRPTELSKEWETKVASNLHVMEKCGYPLTSKEVKILISEYIRRNGIVTRFKDNYPGKEWFRGFKKRNKLSLKKPQSVEIARKKACDPFIVNDYFDMLQRTIQECGLADKPQCIYNLDETSFCSDPTKTKVVGLMGFPSTRTTGSPGRNNTTVLLATNALGKKIPPLIIFQGKHLWSEWLFKNDNIHTAYAVSKKGWMETTIFEQYIKAVFLPAIGAERPVLLVYDGHKTHVDLNVIDLLVAENITVLKLPAHSSHILQPLDCSTMKPMKDKWDSELVKWQRLHVGAKLPKQEFARIITNIWDDLNPVIIQNGFRKAGICPLNKDAIPKEKFDSLAWSRWEEHQQKKKQLRNDTDHNGEENVEGSHTKKDNSQKEHKVPTLISVCLKTINSEIRRLPDEIDKAIANITRDMKKKLPTENGTKADMNTYSGTRVEFQKWETVKDPKTFILSRPNNANTNANSYSCKVKILDNVLVSSTINKSKEEERVSFEELLLKTISRNDIPKTSKKRISQGSEILTYKDALHRLKNEKEKKEKAEETKRLKKLKRASYNENKKPLINKSKAKKNKRKKILDSDSESDCSYTSINSSEDEGTEVFFRNILEESIDEDLQEPLPLSTRQGQEENRPKIKSERLNKGQKKTLKQNEKAGSLYEHSTVLEERFDEDSDDPLPSTSKGKMKKEKAEETKRLKKLKRASYNENKKPLINKSKAKKNKRKKTLDSDSESDCSYTSMNSTEDEGPEIFFQNILEESIDEGLQEPLPLSTRQGQEENRPKIKSERLNKGQKKTLKQNEKAGSLYEHSTVLEERFDEDFDDPLPSTSKGQKQKTPKIKSERVKERKTYTAKKKIFTQKENKMPQPQASEVKKKEDLDVGDFILAGFRSTKGKRTYKYVCLIEDINQEKIVVKGLKSKKDNREFKSSLKTTFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00449025; iTF_01153884; iTF_00726301;
- 90% Identity
- -
- 80% Identity
- -