Aocu008346.1
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- -
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000066.1:862268-864718[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-08 1.2e-05 25.3 0.0 3 37 11 45 9 51 0.78 2 2 2.1 5.7e+02 0.7 0.0 28 41 181 195 180 198 0.83
Sequence Information
- Coding Sequence
- ATGTCGTCAAAAAAACGCCAATACTCCAAAGAGGCAATAGAAAAGCCGATTAAATTTATTATAAACGATGAAGGATCGATTCGTCAAGCAGCTAAAAAATTTGGTGTGCCCAGAAGTAGTATCCAATACAAAATACGAAATCCTAACACAAAGTTTAAGTCTGGACCTGATCCAGTGATTACCGAAGCTGAAGAAAATGAGTTGTGTAATTTCATTATACAACAAGCTAAACGAGGATTTCCCAGAAAAAAAGAGGATATACAGCCTGGGGTAAAGCTGCAACCAGAAAATGCCATAGCTGGTTTTAAAGCAACAGGTGTTTATCCCTGTGATCGCTTAGCTATTTCAGATTATGCGTTTGCTATGACGGATGTGCTAAACAATGAGAACAGGGACCAGCTTAACGATAAAGAACCTAATTCATTGGATGTGGAAATGAACCATGCCAGCACGTCTGGAATTGAAGATAATGGGAGCAGGGTGCACCCGGGAGATGAACAATCTGACTCCTTGAACGTGACTTACGTGGAAATGACCGAAATTAACAATGTTACACTGCACGTAGAAAGGAAAAAAATGTCGCCTCCCACCCCTCCGGGCCCTCCGGGCTAA
- Protein Sequence
- MSSKKRQYSKEAIEKPIKFIINDEGSIRQAAKKFGVPRSSIQYKIRNPNTKFKSGPDPVITEAEENELCNFIIQQAKRGFPRKKEDIQPGVKLQPENAIAGFKATGVYPCDRLAISDYAFAMTDVLNNENRDQLNDKEPNSLDVEMNHASTSGIEDNGSRVHPGDEQSDSLNVTYVEMTEINNVTLHVERKKMSPPTPPGPPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -