Aocu019518.1
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- Trit1
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000202.1:2540477-2545260[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-09 6.2e-07 29.4 0.1 4 38 16 50 13 56 0.90
Sequence Information
- Coding Sequence
- ATGGAACCTCCTGTTAAGAAACGTCGTGCACTTTGGACAGTCAACCAATTGGCAGCTGCAATGGCAGCCGTGCAAAATGGACTACTATCAGAGCGTGCAGCAGCTATTCAGCACGGGATACCGAGAAGAACCCTGAAAAACCATTTAATGAACCGAACAAACGCAGAAGATTCGATTCCTTCATATTCAGCATCACCATCTTTATTGACAGAAGCAGACTATTCATTGCCGGTTTTGTCCAACTCTAATACAACGACGAATCATCGTTTAGTCGATTACAGCTCATCAGATTCTGGCAGTATTATACAAGAACCACCTATTCAATTACAAGAAACAAATAACATTACAAGGCGACCAATTGTTTATAGCTCAAACACCGATACTTCTGTTGAAGACCTTATATCTCTTTTAGCGAATTATCACAATAGGCAAGATAGCCAAAACTTATACAGCCCCACTCCATCAGAAGACCAAAATGCAGTTCTTCCATTGATGCAAGAATATACGCCAGAAAAAGGAATCAGCCACGGTAGTTACATACATAATGTGGCAAGGCAGCGATCTGATAGTTCGTCATCAGAGGACTCAGAGGATAATATACCATTACAGAATCTTAGACAGCAGGATAAAAGTTTGAAATCTCCTTTCCAACAGCTAATACCAACTCCAAATTATGCGGTGGTGAAGCAGAATAAACCAAGACGGAAAGCTATTAACTACAAAGGCCAGCGGGTTACTAGTTTACTAGAGACTTATTTTTGGAAAGAGAGGAAAAAAAGAAAAGACAAAAGAGACAGCAAACTCCTAAAAGAGGCAAAAAGAACAAAGAAAATAAAAAAAACAAAGGGAAACCTGATGATACGTGGTATTGCTACGCATGTCATACAGAAAGGATCCAAGATATGCGACAATGTCAAGCCACCGGACTATACCAAAGGCGTCTTCCAAACTCTCGGCTTTAAAGAATTTCATGACTATCTAATGTTATCCGAAGAGGAAATAAACAGTGATTCAGGAAAAAAATTGCTCAATCAGAGCATTGAAAACATGAAAATGGGCACCAGAAGGTACGCCCGCCGGCAAAACAAGATGATTAGAGGAAGATTCTTAGAACATCCTACAAGAGAAGTACCACCTATTTACGAACTTGATACTACAGACGTTTCAAAATGGGATGATGAAGTTAAAAACAAAGCTATACACATTTTAGAAAGTTACCTGAACGAAACTCCATGTGACTTTGAACCATTAACAAGCGAAATAGATGAAATGAAAAGAGGTGTTGATGGAAATTCACACAACCACTGTGATGTGTGCAACAGAATATTCATAGGGGATAATGTGTATGCCATTCATCTTAAGTCCATAAGACATAATAAAGTGCTGAAGAAAAAGAAACGCCTTGAAGAGCTGAAGAGGAAGATGGAGCTGACGGAGAAGACTTCTGATGCTTGA
- Protein Sequence
- MEPPVKKRRALWTVNQLAAAMAAVQNGLLSERAAAIQHGIPRRTLKNHLMNRTNAEDSIPSYSASPSLLTEADYSLPVLSNSNTTTNHRLVDYSSSDSGSIIQEPPIQLQETNNITRRPIVYSSNTDTSVEDLISLLANYHNRQDSQNLYSPTPSEDQNAVLPLMQEYTPEKGISHGSYIHNVARQRSDSSSSEDSEDNIPLQNLRQQDKSLKSPFQQLIPTPNYAVVKQNKPRRKAINYKGQRVTSLLETYFWKERKKRKDKRDSKLLKEAKRTKKIKKTKGNLMIRGIATHVIQKGSKICDNVKPPDYTKGVFQTLGFKEFHDYLMLSEEEINSDSGKKLLNQSIENMKMGTRRYARRQNKMIRGRFLEHPTREVPPIYELDTTDVSKWDDEVKNKAIHILESYLNETPCDFEPLTSEIDEMKRGVDGNSHNHCDVCNRIFIGDNVYAIHLKSIRHNKVLKKKKRLEELKRKMELTEKTSDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -