Aocu004950.1
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- -
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000034.1:1670630-1671613[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.5e-10 2.3e-07 30.7 0.2 4 38 16 50 13 56 0.90
Sequence Information
- Coding Sequence
- ATGGAACCTCCTGTTAAGAAACGTCGTGCACTTTGGACAGTCAACCAACTGGCAGCTGCAATGGCAGCCGTGCAAAATGGACTACTATCAGAGCGTGCAGCAGCTATTCAGCACGGGATACCGAGAAGAACCCTGAAAAAACATTTAATGAACCGAACAAACGCAGAAGATTCGATTCCTTCATATTCAGCATCACCATCTTTATTGACAGAAGCAGACTATTCATTGCCGGTTTTGTACAACTCTAATACAACGACGAATCATCGTTTAGTCGATTACAGCTCATCAGATTCTGGCAGTATTATACAAGAATCACCTATTCAATTAGAAGAAACAAATAACATTACAAGGCGACCAATTGTTTATAGCTCAGATACCGATACTTCTGTTGAAGACCTTATATCTCTTTTAGCGAATTATCACAATAGGCAAGATAGCCAAAACTTATACAGCCCCACTCCATCAGAAGACCAAAATGCAGTTCTTCCATTGATGCAAGAATATACGCCAGAAAAAGGAATCAGCCACGGTAGTTACATACATAATGTGGCAAGGCAACGATCTGATAGTTCGTCATCAGAGGACTCAGAGGATAATATACCATTACAGAACCTTAGACAGCACAATAAAAGTTTGAAATCTCCTTTCCAACAGCTAATACCAACTCCAAATTATGCGGTGGTGAAGCAAAATAAACCAAGACGGAAAGCTATTAACTACAAAGGCCAGCGGGTTACTAGAGACTTATTTTTGGAAAGAGAGGAAAAAAAGAAAAGACAAAAGAGACAGCAAACTCCTAAAGGAGGCAAAAAGAACAAAGAAAATAAAAAAAACAAAGGGAACCCTGATGATACGTGGTATTGCTACGCATGTCATACAGAAAGGATCCAAGATCAATGTCAAGTGTGTCAGAAATGGTACCACGACCAATGTGTTGGCCTAACGAAAGACGATATCAATTTCGTTTGCCCCGAATGCAATTAA
- Protein Sequence
- MEPPVKKRRALWTVNQLAAAMAAVQNGLLSERAAAIQHGIPRRTLKKHLMNRTNAEDSIPSYSASPSLLTEADYSLPVLYNSNTTTNHRLVDYSSSDSGSIIQESPIQLEETNNITRRPIVYSSDTDTSVEDLISLLANYHNRQDSQNLYSPTPSEDQNAVLPLMQEYTPEKGISHGSYIHNVARQRSDSSSSEDSEDNIPLQNLRQHNKSLKSPFQQLIPTPNYAVVKQNKPRRKAINYKGQRVTRDLFLEREEKKKRQKRQQTPKGGKKNKENKKNKGNPDDTWYCYACHTERIQDQCQVCQKWYHDQCVGLTKDDINFVCPECN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00071356;
- 90% Identity
- -
- 80% Identity
- -