Asol159365.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- -
- Assembly
- GCA_963170755.1
- Location
- OY720685.1:39778001-39790109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0045 1.5 12.6 1.5 1 23 342 364 342 364 0.97 2 17 0.026 8.7 10.2 2.9 1 23 370 393 370 393 0.94 3 17 0.0023 0.75 13.5 2.2 2 23 429 451 428 451 0.96 4 17 0.033 11 9.8 2.7 1 23 457 480 457 480 0.96 5 17 0.062 21 9.0 7.0 1 23 486 509 486 509 0.96 6 17 0.019 6.2 10.6 2.4 1 23 515 538 515 538 0.97 7 17 9.2 3e+03 2.2 3.9 1 13 544 556 544 568 0.85 8 17 0.0024 0.78 13.4 1.0 1 23 574 597 574 597 0.98 9 17 0.038 13 9.7 1.2 1 23 632 655 632 655 0.94 10 17 0.021 6.9 10.5 3.2 1 23 690 713 690 713 0.98 11 17 2.2 7.1e+02 4.1 4.8 1 23 719 742 719 742 0.96 12 17 0.11 36 8.2 1.5 1 23 748 771 748 771 0.98 13 17 0.05 17 9.3 4.6 1 23 777 800 777 800 0.95 14 17 0.011 3.5 11.4 0.6 1 23 806 829 806 829 0.95 15 17 0.52 1.7e+02 6.1 5.9 1 23 835 860 835 860 0.98 16 17 0.043 14 9.5 1.6 1 23 866 889 866 889 0.96 17 17 0.0015 0.48 14.1 1.2 3 23 897 918 897 918 0.97
Sequence Information
- Coding Sequence
- ATGACTGAACGAGTTGGAAAGTGTGATATAGGTGGTGTAGAAATTGCAGAGAATACATCTAGAGTGAAAGATGAAGTAGAGAACGATGTTTATATAGAGGATGATGTCCTTATTTATGAAAATGATATCAATATATGTGATACTGACGATACTCAACTAGAGCATCCTATATGGAATGATAACATAAATCAGTCTGAAACATCTACTATTATGAACAATAGCAAAGCTGAATTGTTGTTGTCTGAAGCACATCATAATACTGTACACACGAATGTAGCAAATGAcattaaaattgaatttgatagtGGACTATTCTTTTGCTACCATTGTGATGCGTATTATGAAGATTATTGCAACAAATGTGGAGTTCTTGTTCACATTTTGAACAGACACATTCCTATCGACACAGATGTTAATGCAGAAAATGAAATACCCAAGAATATTTTAGAAATCAGAAAGAAATCTGAGCGAATAGGAATATTTGCTTTGAAAATTATTCCTGATGGTGTAAAATTTGGACCCTTTCATGGGCTTAACTGTTCGGATGGTTCTCTGAGGTTGAAAGGTGGATATTTTGTGAAAACTGAAGATAATCCCAAGATTTttaattggatgcagtacatcaATCCTGCCAAGTGTATCTCTGATCAAAACCTGCAGGAATTACTGGTGCATTTTGGAGAAGAATATGAAGATAGCGTTAGGAATGATGTCGAAATTGACTTTGTCCCTGTCGTAGAAAGggattgtaaagaaatatttgcCTGTATATTTTGTTGCCTCGGATTCAGTTCGAAGATGTATTTGGCTCAGCATAAAACCATTTGCTTCAGCAGAGGCGGTGAGGATTTTTTTGGAAAAGAACTTACCCAGTGCTCGTTTTGCAAAATCTACTTGGAGAAGGAATATTTGGAGCATCACATGAGTTATTGCTGTGATAAAAATGCCAGatGGTATGTTGCTCCGGTACTGGACAATCGAACAGCTGAAATAAGTTGTCGCAAAAAACGTCGTCGGCAATTGTACAAGTGCAACAAATGCAGTTATAAAACAACTTACAAAGCAGAGCTCAAAGGACACGTCAACGAACATTGCCCTGTGAAAACGCACAAATGTGGCATTTGTTATAGACGCTTCAAGATAAAGAAACTACTGAAATTGCACGTGTTAAACACGCATATCAACGCTGAAAAATATTATACCAGCGACAATCTCCAACAATATATAACTGATAACATTTCGAAAATTGATCATTATTACACGTCAGAGCCTGTGAAACATTTGAAATGTTCGGTGTGTAATTTCCGAACGAACAGGGAATCTTACTTAAGCACACACATGAAGAAAATGCATCCGAAGGAGTACCGTTTCAAATGCGACAAATGCACGTACAAAACTTACTTCGCGTCGGTTCTAACCAAACACATAAAACTAAAACATCTCCAGGTTTATCGTCATAATTGTAAGATATGTGAATTCAGGACAGACCAAAAATTTCATTTCGAAAGACACATCAAGACGAAACACCTCAGAGACTTCGACTATAATTGCGCCTCCTGCAATTACAAGACAAACTTCAAGGCTCATTTGGAGATACACATCAGATCGAAACACCTCAAGCTCTACAAATACAAATGTGACTTGTGCGAATGCAAATTCAAAACTAACATCAGTCATCATTCACGTCATGTGAAAACAGTGCACCTCAAAGAATTCAGTTACGAGTGTGAAAATTGTGAATACAAGACCAACAGCAAGTCTGGATTTGAGAGTCACGTAAGAATGAAACAtcttaagatatttaaatacaaGTGTGAGGTGTGTCAGTTTGTGACGGATTGCGGCTCTAAATTACGATTACATTCCATGACGATGCACCTCAAGGAGTTCAGATATGCTTGCGACAAGTGTCAATATAAAACGAACTATACGGGAAATTTGAGAACGCATGTGGATTCGAAGCATGCCAAGGAGTTGAGGTATAAGTGCCCGTCCTGTGAATACAAATCTAACTGTGATGCCCACTTAAAACAACATTTGAAGAAGCAACACGCAGATGGATTTAAATACAAATGTCAGTCTTGTGATTACAAAtcgaatcaaaaattaaatttgaaaatgcaCGAAAAAACAAAACATCTTCAGGAATTCAAACATCACTGCGAGTATTGTGAATACAAATCAAACTTCAGAGTCACATTCAGAAATCACGTGAACATGATACACCTTAAGGTGTTCgcttttaagtgtgactcttgtgaatatcaAACGAATGAAAAGAAGGGCCTAATACAACATACTAAAACGACACATCTGAAGGAATTCAGTCACAGCTGTGAGCAATGCGACTACAAAACTAACAGCAGACAACATCTGAAGGAGCACGTGAGTCGTCTACACCTGAAGGAACGCAATTTCATATGTCACCTGTGCGATTACAGAACTGCTGCCAAGTCGGCGTTGTTAACTCACATAAAAGGGAGACACCTTAGTGAATATGATTACAAGTGCGAAGTCAAAAATTGCAAATACCAGACACACAGCAGGTACAAGTTAAAGAATCACCTGAAGACGAAACACGCTGAAGGATTTAGTTTCCACTGTGACGTATGCgaatttaaatcaaattttaacGAGAACTTGGTCAGACATGTAAAATCAGTACATCTCCAGGAATTCCGGCTTGGGTGTGAGTCGTGTGGTTATCGAACTAACGATAGAGCCCAACTGAAGCGACACATCAAAAGTAAACATAAGGATAAGAACATTTCATAG
- Protein Sequence
- MTERVGKCDIGGVEIAENTSRVKDEVENDVYIEDDVLIYENDINICDTDDTQLEHPIWNDNINQSETSTIMNNSKAELLLSEAHHNTVHTNVANDIKIEFDSGLFFCYHCDAYYEDYCNKCGVLVHILNRHIPIDTDVNAENEIPKNILEIRKKSERIGIFALKIIPDGVKFGPFHGLNCSDGSLRLKGGYFVKTEDNPKIFNWMQYINPAKCISDQNLQELLVHFGEEYEDSVRNDVEIDFVPVVERDCKEIFACIFCCLGFSSKMYLAQHKTICFSRGGEDFFGKELTQCSFCKIYLEKEYLEHHMSYCCDKNARWYVAPVLDNRTAEISCRKKRRRQLYKCNKCSYKTTYKAELKGHVNEHCPVKTHKCGICYRRFKIKKLLKLHVLNTHINAEKYYTSDNLQQYITDNISKIDHYYTSEPVKHLKCSVCNFRTNRESYLSTHMKKMHPKEYRFKCDKCTYKTYFASVLTKHIKLKHLQVYRHNCKICEFRTDQKFHFERHIKTKHLRDFDYNCASCNYKTNFKAHLEIHIRSKHLKLYKYKCDLCECKFKTNISHHSRHVKTVHLKEFSYECENCEYKTNSKSGFESHVRMKHLKIFKYKCEVCQFVTDCGSKLRLHSMTMHLKEFRYACDKCQYKTNYTGNLRTHVDSKHAKELRYKCPSCEYKSNCDAHLKQHLKKQHADGFKYKCQSCDYKSNQKLNLKMHEKTKHLQEFKHHCEYCEYKSNFRVTFRNHVNMIHLKVFAFKCDSCEYQTNEKKGLIQHTKTTHLKEFSHSCEQCDYKTNSRQHLKEHVSRLHLKERNFICHLCDYRTAAKSALLTHIKGRHLSEYDYKCEVKNCKYQTHSRYKLKNHLKTKHAEGFSFHCDVCEFKSNFNENLVRHVKSVHLQEFRLGCESCGYRTNDRAQLKRHIKSKHKDKNIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -