Asol085944.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- -
- Assembly
- GCA_963170755.1
- Location
- OY720679.1:2451637-2453712[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6e-05 0.0051 20.3 0.4 2 23 208 229 207 229 0.97 2 12 0.11 34 8.3 0.6 2 23 233 254 233 254 0.96 3 12 0.011 3.7 11.3 0.1 6 23 259 277 259 277 0.92 4 12 0.15 50 7.8 0.1 2 23 280 301 279 301 0.93 5 12 0.0067 2.2 12.0 2.0 1 19 307 325 307 328 0.93 6 12 0.023 7.6 10.3 0.9 1 23 330 352 330 352 0.98 7 12 0.16 52 7.7 3.4 1 23 367 390 367 390 0.95 8 12 1.3 4.3e+02 4.8 4.2 1 23 409 432 409 432 0.92 9 12 0.85 2.8e+02 5.4 1.2 3 23 514 535 513 535 0.94 10 12 8.1 2.7e+03 2.3 0.2 6 23 539 556 539 556 0.94 11 12 4.9 1.6e+03 3.0 1.3 2 21 570 589 569 594 0.90 12 12 0.0029 0.96 13.2 0.1 1 23 650 672 650 672 0.97
Sequence Information
- Coding Sequence
- ATGTCATTTCAAATATGTAGAGTTTGTTATCAAAGAGGTTACGACTTGATGTGTTTAAAAGACGAAGTCAATAATTACGAACAAAAACTCTCATCGTGTATACCTGAAATTGATATATATGTTATACACAATCCTGGGATATGTCGAAAGTGTGCTGATATGCTCGATGTTGCATTTCAGTTTCGGAACATATGTCTGGAAAACGAGAAACGGTACAATGACACATTCGTTGAAAACAATAGAAAATCTACAATGCAAATTATCATTAAAAAAGAAACTGATGCAGGAGAAAATAATGATAGAATTAATACAAATTACGATAGTCCTGATTTACTAACCGTGCTTGAAGTACAAACTGAATCAAAACATTTCTGTTCTGTGTGTAATAAGGATTTCCCTTCACATCATGATAAGAAATTACATGATTTTAAACTGCATCGACAATTGAAACATAGAATCTTGAAAAATTCATTATCTCCAAGTATTGAACATTTAAATAGTGCAAAGCAGAGTACTAGTGTTCAAACCACAGAATCTAGTAATATGAATGTGCAGGACATAAGTGATTCTGAAACTGAATCAGCTCCAAGCACTAATAACTCTTTGAATGATGCCACATTAAAGTGTGCCGAGTGCAAtattacttttataaataatgatgatctaaataaacatcaagaaaaGCATTTAAAAAGATCTTGTCACATATGTATGAAAACTTTCGATGAAGAAGGTGATCTTGACAGCCATGTTAAATTGCATTTTATTAAATGTTGCGGTGAATCTTTTTCTACAGCATCTTTATTGAAGCTGCACACATACAACGAACACTATTTGATGTGTGGTATTTGCAATGAAAAATATACAGAAGTTACGGCACTGTTCAATCATGTACTAGACCATGTAGGAATTCATTGGTATAAGTGCAATTTTTGTGGAAAACAATTTAACACTAGAGTGGGCCTAGATGAACATAATTGTCAATACTACATGTGCCATGTTTGCGGtacaatttattttacaattaaaGCATTCGATGAACATCTAAAAATTCACCAAACCGATCGAGAATTTAGAGGAGATGTTGGAAATCAAAATTTTCATTGTGTCAGTTGTAGCAAGTGTTATCAGACCCAAGCGTTATTAATGGAACATACAATTAGGGAACACAGTGTCAGTGCGAGTCAAACAAATTCTAGCTTATTTGCATCTCAAAGGAATTCATTCTCGTGTTATCTATGTGGAAACGTGTATCATCTGCATATTcatttaaaaacacatattttacaaattcactgtaataaaattttaactaTACCGGTTGCTGATTgtcgaaaaaataatttttatacaacgCATGAGTGTTTACGTAAAAGTTTCAGTATGCTCTCTAAGTATTTAATGATGTCAAGTCATGCACTTTTCCTCCCTAGAAACGTAAATTTAAGGAGACGTTTCGACATTTTGTCTCAGTATTTAAACTGTAAAGCAAGAGCTTCGATTTCAAGTTATTCACTTATTGCACGATGCATAAAAATTTGTTTTGTGTGTAAAGTGATGTACATGAGTTATAAATCACTCTGTGCACACGTGAAAGCGAGACATCCTTCGTGCTGTTGGATAAAGTTTAAAACAATTAGTGATTTTTTTGAACATAATGTTACACACTACGATGAAGTGGACAAGGTAGGTGGTCAAGATGAAATTATGTGCATGCGCTGTACAACCAAGTACAAAAATTATATAGCATTACTTACCCACACATGTATTTGGTACAGACACAAACTTACAAATGCACCCTCGTTAAAACGCAAAGATCACCTATCTCTGGAGAATGCCGAAGACATTGAAATGGAAACAAATACAAATACTCAGTGTACCATAGAAATTCCTGAAATTGATCAATCCGAGGATGTATCATGTGATAATGATGGTAATTCGAAAGAATTTATGTGTGTGATGTGCAAGGAATATTTTGATTCTAAACCTGAATTAAAGGCTCACGCaaacatacatatttaa
- Protein Sequence
- MSFQICRVCYQRGYDLMCLKDEVNNYEQKLSSCIPEIDIYVIHNPGICRKCADMLDVAFQFRNICLENEKRYNDTFVENNRKSTMQIIIKKETDAGENNDRINTNYDSPDLLTVLEVQTESKHFCSVCNKDFPSHHDKKLHDFKLHRQLKHRILKNSLSPSIEHLNSAKQSTSVQTTESSNMNVQDISDSETESAPSTNNSLNDATLKCAECNITFINNDDLNKHQEKHLKRSCHICMKTFDEEGDLDSHVKLHFIKCCGESFSTASLLKLHTYNEHYLMCGICNEKYTEVTALFNHVLDHVGIHWYKCNFCGKQFNTRVGLDEHNCQYYMCHVCGTIYFTIKAFDEHLKIHQTDREFRGDVGNQNFHCVSCSKCYQTQALLMEHTIREHSVSASQTNSSLFASQRNSFSCYLCGNVYHLHIHLKTHILQIHCNKILTIPVADCRKNNFYTTHECLRKSFSMLSKYLMMSSHALFLPRNVNLRRRFDILSQYLNCKARASISSYSLIARCIKICFVCKVMYMSYKSLCAHVKARHPSCCWIKFKTISDFFEHNVTHYDEVDKVGGQDEIMCMRCTTKYKNYIALLTHTCIWYRHKLTNAPSLKRKDHLSLENAEDIEMETNTNTQCTIEIPEIDQSEDVSCDNDGNSKEFMCVMCKEYFDSKPELKAHANIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -