Asol048558.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- -
- Assembly
- GCA_963170755.1
- Location
- OY720677.1:24112180-24119791[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.1 1e+03 3.6 2.1 1 20 303 322 303 324 0.92 2 15 0.0078 2.6 11.8 2.5 1 23 454 477 454 477 0.98 3 15 0.055 18 9.2 1.7 1 23 483 506 483 506 0.97 4 15 0.00054 0.18 15.5 1.5 1 23 512 535 512 535 0.98 5 15 0.017 5.7 10.7 1.6 1 23 541 564 541 564 0.98 6 15 0.00012 0.039 17.6 1.9 1 23 570 593 570 594 0.97 7 15 3 9.8e+02 3.7 0.9 1 23 627 650 627 650 0.93 8 15 0.039 13 9.6 1.9 1 23 671 694 671 694 0.98 9 15 0.0034 1.1 13.0 1.4 3 23 702 723 700 723 0.97 10 15 0.012 4 11.2 0.8 1 23 729 752 729 752 0.97 11 15 0.00067 0.22 15.2 3.9 1 23 758 781 758 781 0.98 12 15 0.016 5.3 10.8 3.0 1 23 787 810 787 810 0.98 13 15 0.0018 0.58 13.9 4.6 1 23 816 839 816 839 0.98 14 15 0.00039 0.13 15.9 1.3 1 23 845 868 845 868 0.98 15 15 8.6 2.8e+03 2.3 3.8 1 23 874 897 874 897 0.95
Sequence Information
- Coding Sequence
- ATGAATAATATGAAACATGAATGCATACCATTTACAGAAGATTCATGCAGTATAAAAGACGACGTATTTCAAGAGTGTGGCTACACAGAAGAAGTTTTTATCAGTGACACTGCAATTAGCAAAGATGATGGCCAATTGAAGAAATCTGTAAAGAATTATTTACAAATACAGTGTGAGTTACAGGGTACCAATACAACTAGCAAGAGGGATGAAATAGAATGTGAAATAAAAATTGCAAATGATATAAACGATAGTTTAATAAAACAATTGGATGTATCAACTCAAGACATCAAACTGGAATTAGATCCTGAAGTGCATGCCACTGAGTTTGTCGAAGTAGAATGCGACATAAATGCTATGAATGATATAAAAACTGAAATTGATCCCAATAATATACAATTATTTTGTGAACATTGTCATGCATATTACGAAGATTATTGCACCATGTGTGGAATGCTCGTGTGCATTTTGAATAAGAATGTTGGGCATACTTCAGATTACAGAGCACAAGAAGAAATACCAGAGGATATCTTAGAAATTGGTGATCCGTTTGGACAGCTAGGAGTATTTGCTTTAAAAGTTATTCCTGAAGGAGTAAAATTAGGGCCATTTAGTGGACTTGATATTTCTGAATGCCCGTGGAAAGTAAAAGGAGGAAAATTCATAGTGAGCGAGAAtagaattaattatttgaattggaTGAAATATATAAATCCTGCCAGGAGCATATCTGAACAAAATCTGCGTGCATTTCAATGTCAAGGTTATCTCTATTATCAAAGTAGTTGTGAAATCAGAAGAGGTGAAGAATTGTTGGTGTATTTCGGTGAGGAGTACGATGATAGTTTGGTTAATTATATTGAAACAGAGTTTATTCCAACTGAGAAAAATGATGTCAAagatgtatttgcctgcacattttgttGCCTTGGTTTCAGCTCTAGAAAATATTTGGCAAAGCACAAAAGTATATGCATTAAGGAAACAAATGTAGAATTTCTAATTGAagATCTTACCCAGTGTCCATTTTGTAATATCTTCCTGGGGAGGACAGAATATTCCGAGCATCATATGGCCTACTGCTGTGAAAGGAATGTCAGaaaGTGCATTTCTCTGCCTCGCTCGGACAATCAAGCAACGCGAAAAAAAAGTAAACGCAAAAGGTCAAATCATGAGGTGCCAGAAGGTCCATTTCAATGTTCATTGTGCGAGTTTCAAACGAAATGTGAAAATTCCTTGAGAAGGCATAGAACGGTAGACCATACTGAAGAGGTTAAGTGGCCTTCGTACGAATCTCGACTGAATAATAAGCAAGCTTTAAAAACGAGTACAAAAGAAAAACATCAGGAGAAAATTGATTATAAGTGTTCATTATGCGAGTTCAAAACAAATACCAAACGCCTTTTTGAAAATCATATGACTACAGAACATCCTGGGAAGTTTAATTTTGAATGTAATGAATGTGTCTACAAGACAAATTACAACTTGAATTTTGAAAGTCACATAAAAAGAAAACACCTTAAGGATGTTATTTATAAATGCGGTGAATGTGATTTTGGGACATGCTACGAGGAAAATTTAGGCAAACATATGAGAACGATGCATCTGAAAGAATTTACTTACAAGTGTGCGTCATGTGCATACAAAACAAATTACAACTCGAGTTTAGAAAATCATATTAAAAGAAAGCACCTGAAGGATATTGTTTATAGATGCAATGAATGTGAATTAAGCACTTACTATGAGGAAAACTTAAGAAGGCATATGCGACTAATACATCACAGCGAATTTAGTTACAAGTGTTCTATAAGTCAGCACAAAGCAAATTCGAATTTAAATTTACAACCTCAAAAAACAATACATCTTGAGGAAATTGATTATAATTGCATGTCATGTGCATTCAAAGCGAATAGCAAACGAATGTTAGAACGTCATGTGAAAATAAAACAtcctgtaaattatttaaatttaggacgtCATATGACATCACAACATCTAGAAGAATTTGACTATAAGTGTACATCCTGTGAATTCGGTGTAAATACTAAGCGACTGTTTGAAAATCACATGACCACAAAGCATCCTGGGAAGTTCAATTATGGATGTAGTGAGTGTCGATACAAGACAAATTACAACTCAAATTTAGaaagtcatataaaaaaaaagcaCCTTAGGAACACTGTTTACAATTGTAGCGAATGTGAATTTAAGACCTACTACGAGGAAAGTTTAGGAAGACATATGAAAACAATACACCTTCGAGAATTTAATTATGAATGTACTTCATGTCCATACAAAACACAACACTATTCAAATTTAGAACGTCATATGAAAACCAGACATATCGGAACATTCAATTATAAGTGTTCGACATGTGAATTCAAGGCAAATACTAAACAGCTGTTTGAAAATCACATGAAAACAAAGCACCCTGGGAAGAATAATTACAAGTGCAATAATTGCGAATACAAGACGAATTATCACTCGAATTTAGAAAGTCACATAAAGAGAAGACACCTTCGGGATATTGTTTATAAATGCAGTGAATGTGAATTTGTGACGTACTACGAGGAAAGTTTAAGAAGACATATGAAAAAGATACACCTGACAGATTTTACTTACGATTGCGCGTCGTGTCCTTATACAACAAATTGCTACTCAAAATTGGAACGTCACACGAAGAGAAAACACCAGGAAACAGTTGATTTTAAGTAG
- Protein Sequence
- MNNMKHECIPFTEDSCSIKDDVFQECGYTEEVFISDTAISKDDGQLKKSVKNYLQIQCELQGTNTTSKRDEIECEIKIANDINDSLIKQLDVSTQDIKLELDPEVHATEFVEVECDINAMNDIKTEIDPNNIQLFCEHCHAYYEDYCTMCGMLVCILNKNVGHTSDYRAQEEIPEDILEIGDPFGQLGVFALKVIPEGVKLGPFSGLDISECPWKVKGGKFIVSENRINYLNWMKYINPARSISEQNLRAFQCQGYLYYQSSCEIRRGEELLVYFGEEYDDSLVNYIETEFIPTEKNDVKDVFACTFCCLGFSSRKYLAKHKSICIKETNVEFLIEDLTQCPFCNIFLGRTEYSEHHMAYCCERNVRKCISLPRSDNQATRKKSKRKRSNHEVPEGPFQCSLCEFQTKCENSLRRHRTVDHTEEVKWPSYESRLNNKQALKTSTKEKHQEKIDYKCSLCEFKTNTKRLFENHMTTEHPGKFNFECNECVYKTNYNLNFESHIKRKHLKDVIYKCGECDFGTCYEENLGKHMRTMHLKEFTYKCASCAYKTNYNSSLENHIKRKHLKDIVYRCNECELSTYYEENLRRHMRLIHHSEFSYKCSISQHKANSNLNLQPQKTIHLEEIDYNCMSCAFKANSKRMLERHVKIKHPVNYLNLGRHMTSQHLEEFDYKCTSCEFGVNTKRLFENHMTTKHPGKFNYGCSECRYKTNYNSNLESHIKKKHLRNTVYNCSECEFKTYYEESLGRHMKTIHLREFNYECTSCPYKTQHYSNLERHMKTRHIGTFNYKCSTCEFKANTKQLFENHMKTKHPGKNNYKCNNCEYKTNYHSNLESHIKRRHLRDIVYKCSECEFVTYYEESLRRHMKKIHLTDFTYDCASCPYTTNCYSKLERHTKRKHQETVDFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -