Asol061956.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- Prdm9
- Assembly
- GCA_963170755.1
- Location
- OY720677.1:88653799-88657458[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00018 0.058 17.0 3.0 1 23 362 384 362 384 0.98 2 12 0.00044 0.14 15.8 1.1 1 23 390 413 390 413 0.95 3 12 0.034 11 9.8 1.5 1 23 523 546 523 546 0.98 4 12 0.0066 2.2 12.1 4.4 1 23 552 575 552 575 0.98 5 12 0.0032 1 13.1 3.0 1 23 610 633 610 633 0.97 6 12 0.081 27 8.6 5.1 1 23 639 662 639 662 0.98 7 12 0.056 18 9.1 5.1 1 23 668 691 668 691 0.97 8 12 0.00042 0.14 15.8 4.0 1 23 697 720 697 720 0.98 9 12 0.0066 2.2 12.1 2.2 1 23 726 749 726 749 0.93 10 12 0.37 1.2e+02 6.5 4.3 1 23 755 778 755 778 0.97 11 12 0.011 3.7 11.3 2.7 1 23 784 807 784 807 0.98 12 12 2.2e-05 0.0072 19.9 1.3 1 23 813 836 813 836 0.96
Sequence Information
- Coding Sequence
- ATGgctaaaaaaattgaaaaacgtTTTATGAAACCAGGTGATAATGGTACCCCTTATGTGAATGATAAATTTGGagacaataattattttatagatgATGAAGCCCATGTTGATGAAGCTAGCCCCAACTTGAATGTTTACAAACTAAAACATATTGTTGATGATAAAATACAACAATGCACACAACAATGTGAAGTATTTCCCGATAGAGATGACATCAACATGGAGTTACTGCCTCTTGAAATATGTGATACAGTTATAGATAATGTTAAAAAAGAAGTAGAAATTAGTACTGGTGACATAGAAATTGACTTTTGCAATAAACCATTGCTTTGTGACCATTGTCATCATGTTTATCAGGATTATTGCACGAAATGCAGAATGCTTGTGCATATATTGAACAGAACTGATACAGTAGAAGTTGTACCAAATGGTATTTTAGAAATTAGAGAGTCAGCTGGACATGTAGGAATATTTGCCTTAAAAGTTATTCccgaaggtgtaaaatttggtcctttcactggactaaGTTCTTCAGAAGGCTGTTGGAGATTGAAAGGGGCAGAATTTCTGATAGCAAGAGAGGATAGTACAAACTATTTCAATTGGATGCAATATATTAATCTAACCAAGAATACTTCTGTACAAAACCTACTGCCATTTCAATATGACCATAGGCTATATTATAATTGTAGTAAAGAAATTCAAGAAGGTGAGGAATTACTCGTATATTTCGGGGACGAATACAAAGATAATCTGAAGAATGGTATTGATATGGATGTTATCCCTCCTGTAGAAGTTGATCTTAAAGATGTGtttgcctgtacattttgctgcTTTGGATTCAGATCGAGGAAATATTTGGTCCAACACAAAACCGTATGTCCCCATGAAACTAATGAAAAGTTTTTGATTGAAGAACTTACGCAGTGTTCATCTTGCAAAATATACTTGGATATGAAAGAATATTTTGAATATCACATGGCTTATTGCATTGAGAAAAATGAAAGaaattATATTCCACTGAAATTGGACAATCACGCAGTAGAAACACAGAGATGCAGAAAACAACGCAGTCAATTGTATAAATGCACGCAGTGTAATTACAGAACGTCATACAACAGTGAATTGAAGAACCACCTGAACCAACACTATGAAGTGAAAACATACAGGTGTAGAATTTGTTACAGAGGCTTTAACACAGAGAGATCACTCAAAAGCCACATGGATAATATACACATTGATATCAAAGGAATAGATTACCAAAAGTGTGATACAAGTGAATATGTGATAACAAATTCAAAAACAAGAGTTTCAAAAGAAGAATTACAAGTTAAATGTGCACAAGACAACTTCCAAACACAATGTGAATCTCATTTGATCGAATGTGTGAAAATAGAACAACTTGAAGAATGTGATAATTATAAGGAAGGGGAATATAAATTTGAGAGAAATGAAAGTACTGTTaaagaatataattataaatgtgttAAATCTCACTTCAAGACAAAGAAGAAAACAAATTTACGGAAGTGCAAAAAAGCAAAACATCTCAAAGCTCTTGATTATCAATGTGGACTGTGTGAATTTAAAACCAGCTTGAAGCGGAGCTTGGAAATTCATACAAAAACTAAACATCTCAAGGAATTTAGTTATAAGTGTGTAAAATGTAATTTTAGAACGAATTTCAAGACAAGTTTGAGAAATCATATAAAAACAAAGCATCTTAAACAGTTTAGTTACAAGTGTGCCTCATGTTCATATGAAATAAACCACAAAACAGATTTAGAGCGGTACATTAAAAcgaaacatcttaaagaattCGATCATAAGTGTGGATCATGCGACTACCAAACAAGTCGAAAGGAATATTTGGAAAATCATATAAAATCGAAACATCTCAAAGTATATAAGCATAAATGTAAGTTATGTCAATTCGAAACGAACCACAAACAGGCTTTAGAAATCCACCTAAAAACTAAGCATCTCAAACAGTTTGATTACAGATGTGAAATATGCAAATACAAAACAAACCACAAAACTAATTTTGACATTCATACAAAATCGAGACACCTGaaggaatttaattataaatgtaactCATGTGAATACAGAACGAATAATAAATCACATTTAGAAAAGCACATAGACACAAAGCACCTTAAAAAGTTCAATTACAAGTGTGATTCCTGTGAATATACAACAAATCGAAAGGAACACTTAGAAACTCATGTTGGATCGAAGCATCTCAGGAACTTTTCGCATAAGTGTGTGTTGTGTCAGTTCCAAACAAACTACGATTCGCATTTAGAAattcatataaaaacaaaacatctcaaggagtttgattttaaatgtgcaTCATGTGAATTCATGACGAattataaatcacatttagaAGCGCACGTCAAAACGAAACATCTTGGAAAGTTTGATTATAAGTGCAATGAATGTGATTACAGTACGAACAGAAAGTTGGATTTGGAAAGACATATGAAAGGGAAGCATCGTAAATAG
- Protein Sequence
- MAKKIEKRFMKPGDNGTPYVNDKFGDNNYFIDDEAHVDEASPNLNVYKLKHIVDDKIQQCTQQCEVFPDRDDINMELLPLEICDTVIDNVKKEVEISTGDIEIDFCNKPLLCDHCHHVYQDYCTKCRMLVHILNRTDTVEVVPNGILEIRESAGHVGIFALKVIPEGVKFGPFTGLSSSEGCWRLKGAEFLIAREDSTNYFNWMQYINLTKNTSVQNLLPFQYDHRLYYNCSKEIQEGEELLVYFGDEYKDNLKNGIDMDVIPPVEVDLKDVFACTFCCFGFRSRKYLVQHKTVCPHETNEKFLIEELTQCSSCKIYLDMKEYFEYHMAYCIEKNERNYIPLKLDNHAVETQRCRKQRSQLYKCTQCNYRTSYNSELKNHLNQHYEVKTYRCRICYRGFNTERSLKSHMDNIHIDIKGIDYQKCDTSEYVITNSKTRVSKEELQVKCAQDNFQTQCESHLIECVKIEQLEECDNYKEGEYKFERNESTVKEYNYKCVKSHFKTKKKTNLRKCKKAKHLKALDYQCGLCEFKTSLKRSLEIHTKTKHLKEFSYKCVKCNFRTNFKTSLRNHIKTKHLKQFSYKCASCSYEINHKTDLERYIKTKHLKEFDHKCGSCDYQTSRKEYLENHIKSKHLKVYKHKCKLCQFETNHKQALEIHLKTKHLKQFDYRCEICKYKTNHKTNFDIHTKSRHLKEFNYKCNSCEYRTNNKSHLEKHIDTKHLKKFNYKCDSCEYTTNRKEHLETHVGSKHLRNFSHKCVLCQFQTNYDSHLEIHIKTKHLKEFDFKCASCEFMTNYKSHLEAHVKTKHLGKFDYKCNECDYSTNRKLDLERHMKGKHRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00070815;
- 90% Identity
- iTF_00070815;
- 80% Identity
- -