Asol097699.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- -
- Assembly
- GCA_963170755.1
- Location
- OY720679.1:131600498-131602682[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.3 7.7e+02 4.0 3.8 2 21 231 250 230 253 0.88 2 10 0.094 31 8.4 0.7 1 23 314 337 314 337 0.93 3 10 0.0078 2.6 11.8 2.4 1 23 348 370 348 370 0.98 4 10 0.00017 0.055 17.1 1.9 2 23 489 511 489 511 0.95 5 10 0.71 2.3e+02 5.7 5.3 1 21 517 537 517 539 0.95 6 10 0.0017 0.56 13.9 0.2 2 23 544 566 543 566 0.96 7 10 0.008 2.6 11.8 0.5 2 23 573 594 572 594 0.96 8 10 0.0073 2.4 11.9 4.3 1 23 600 622 600 622 0.96 9 10 0.071 23 8.8 0.2 2 20 627 645 626 647 0.93 10 10 3.6e-06 0.0012 22.3 1.0 1 23 653 676 653 676 0.96
Sequence Information
- Coding Sequence
- atgttttatatatcgGATTTTTGTCATCTATGTTTGAAAGATGACAATGGTTTGATTGATTTATCGGAAAAATTGCCGGAAAATGCAGCGATCGCTTCGAAATTGGGTGCTTGTGTATCGGAAGtggAATGGTCCACATCAAAAACTCTATTAATATGCAGATTATGTTTACAAAAGTTGGAATTAGCGTTCGACTTCAAGCAAACATGTATAAAATCGGTAGGCATCTTGAAAACTCATCTCGGTCAATTAAAATCAAAaggaaaaataaatacaaaaccaGTTAAAGGCAAATTAAGTGTATCTCTCTTGAAGGATACTGTGAGTAATGAtcttatacaaaaatatattcaaGAAAACACAAATAAGTATGGAACGCTGAGCCGAATACTTGACCAGTCGGTAGTTTATGCTCCAACTACCAGCTTTATCATAGCAAATGGACAGCCAATATCATATCAAAATATCTTTCTAAATTTTGTAGCTACAAATAATGTACCAGGAACACAAACAGCACAACCAGTGTTACTTAACGTTGCAAATCAAGCTAGTTTACCAGACAATGATGCGATATTGAAACACCTTTTGGAAACAAAAAAACCTGAGGAGGTTAGCGTGGAAATTGATCCTTCATTATATGATTTTGGACATTTTCTAGCATCTCCTGCACCAACTCCAGCTGCCAATATTGAATGTAAAACATGTTGTAAGTCATACACCACAATAAAGCTGTTACGACATCATTTTGATGAAGTACATGATGGTAATCTCCCATttgaatgtatattttgtttttcGAAGTTTTTGCTCCAAGATCACTATGATAAACACATGAAAAATCATATGGAAGCTGATACTCTGTCTGGGAGCACAGTAAATTTAGATAATATATCGAAATATGCACAAAGCAAAGTTCGAGGGAATGTACTTCCtagtgattttaaatgtgatcaGTGTACGAAAGTTTGTCTTTCATTAGTTGGTTTGGAAAAACACATCACAGAGATTCATAATGGATTTAAACCAAAAACAGCAATACCTTTCAGGTGTAGCATTTGTAAACAGCAATTTTTTTCAGAAGTTGATTTTCAGGAACACAAAAAATCACATACTAATAAGAAATATAAAGTCAATAAAGGATTGAAAActaaaaaagaaatttcaaatggaaATGATAAAGATAATATAGCTGAAAGTGCTTGTGCTCTAAATAATCATGAAAGTAAAATCAGTGAAGGTAATATTGGTGATGTTATAGATATTACGGACTGCACGGATGAAGATAATGACACGAAAACTGAACATTCCACAAAAGATAATAATGTGAACTTAGAAGCAAGGAATGTGGtgaataataatttagaatttggcAGTGAATTGAATGATAATGGAAGTACAAACGATATCACATTCAGTGATGCAACTTTCAACGAGTTCATAATAGAATCTCCAGATGGAAAACCAGTTTGTGGTTTCTGCAAGAAGATATTCGGTAGGAAACACGACTTGAGGCGTCACATAAACAATGTGCATGTGAAAGCCATCCAGTATAAATGCCATTTGTGTAGTGAAGTTTTTTACGAAGGTTTTCGTTTAACACGACACCTCAGGTGCCACTACAGCAGCTTGACTTGCGGCGACTGTCGCCGAATATTTTCTAGTTTGCCAGAAATCACAAACCATATGCTGACAACCCACAATGATTTAAAGAACATTGAGTGCAATGTTTGTTACATGTCATTTAATGAAGTCCACCAACTGAAACTTCACATAGACATGCACATGATGGGTATTGTCTATATATGTCATTTATGCAAAGAAGAGTTCAAGGAATGTCGTGATCTGACGAAACATCTTTCAGAGCACTATGGCATGAAAACATGTGAAAACTGCAATCGAATTTTCGACAAGGAGGATGAGTTTGTAGCCCACAGGGAGAATTGCTTGGACGCGCACTATAAGTGCGACGTTTGCCCCAGAGTATTTAAGAAAAAACGCTACTTACAAGCGCACATTAAAGCGAAACATGCGGAAGAGATATGCATCGCTGAACCACCACAAAAGAAGAAGCAAAAAGTTGATGGTATTTAG
- Protein Sequence
- MFYISDFCHLCLKDDNGLIDLSEKLPENAAIASKLGACVSEVEWSTSKTLLICRLCLQKLELAFDFKQTCIKSVGILKTHLGQLKSKGKINTKPVKGKLSVSLLKDTVSNDLIQKYIQENTNKYGTLSRILDQSVVYAPTTSFIIANGQPISYQNIFLNFVATNNVPGTQTAQPVLLNVANQASLPDNDAILKHLLETKKPEEVSVEIDPSLYDFGHFLASPAPTPAANIECKTCCKSYTTIKLLRHHFDEVHDGNLPFECIFCFSKFLLQDHYDKHMKNHMEADTLSGSTVNLDNISKYAQSKVRGNVLPSDFKCDQCTKVCLSLVGLEKHITEIHNGFKPKTAIPFRCSICKQQFFSEVDFQEHKKSHTNKKYKVNKGLKTKKEISNGNDKDNIAESACALNNHESKISEGNIGDVIDITDCTDEDNDTKTEHSTKDNNVNLEARNVVNNNLEFGSELNDNGSTNDITFSDATFNEFIIESPDGKPVCGFCKKIFGRKHDLRRHINNVHVKAIQYKCHLCSEVFYEGFRLTRHLRCHYSSLTCGDCRRIFSSLPEITNHMLTTHNDLKNIECNVCYMSFNEVHQLKLHIDMHMMGIVYICHLCKEEFKECRDLTKHLSEHYGMKTCENCNRIFDKEDEFVAHRENCLDAHYKCDVCPRVFKKKRYLQAHIKAKHAEEICIAEPPQKKKQKVDGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -