Asol128788.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- -
- Assembly
- GCA_963170755.1
- Location
- OY720682.1:48453057-48454775[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00031 0.1 16.2 0.6 1 23 57 80 57 80 0.96 2 16 0.0006 0.2 15.3 1.3 1 23 86 109 86 109 0.97 3 16 0.00029 0.096 16.3 1.6 1 23 115 138 115 138 0.96 4 16 0.0036 1.2 12.9 2.5 1 23 166 189 166 189 0.98 5 16 0.0036 1.2 12.9 1.9 1 23 195 218 195 218 0.97 6 16 0.12 39 8.1 0.9 1 23 224 247 224 247 0.96 7 16 0.014 4.7 11.0 0.6 1 23 253 275 253 275 0.99 8 16 3.8 1.3e+03 3.4 0.9 1 23 281 304 281 304 0.90 9 16 0.018 6 10.7 1.2 1 23 311 334 311 334 0.98 10 16 0.036 12 9.8 1.7 1 23 341 364 341 364 0.96 11 16 1.5 5e+02 4.6 0.3 1 23 370 393 370 393 0.91 12 16 1.8 6.1e+02 4.4 3.8 1 23 399 422 399 422 0.93 13 16 0.036 12 9.8 1.7 1 23 436 459 436 459 0.96 14 16 1.5 5e+02 4.6 0.3 1 23 465 488 465 488 0.91 15 16 1.8 6.1e+02 4.4 3.8 1 23 494 517 494 517 0.93 16 16 0.085 28 8.6 5.3 1 23 523 546 523 547 0.97
Sequence Information
- Coding Sequence
- atgattttttttttcagacAGACGTTGATATCTCCATTAAATCTTCAACGAGTAAGAGCAGAGAAATATTCATCTACATCGGAAGAAGACCATAAAAGCCCGCAGAGATTGCATCAAAACAAAGCGACATACAAAACTAACCTTAAAATATCTGCCAGCGAAAAAAAATATAAGTGTTCCGAATGCGAGTATAGTGCTGCTTATAAATCACTGTTAAAAAATCACATAAAAGCGAAACATGTTGGTGAAAAACAGTACAAATGCGTAGACTGTGGTTACGAAACTATCTACAAACGACATCTGGAAACACACATAACAGTGAGACATCTACGCGAAAAACAATTCAAGTGTCCAGAATGCGATTACAAAACTGGTTATAAATCACGTTTAAGCAGGCATATGAAAGCAAAACATGTTACTTTCCAAAAGATAGACTCGCATATCAAATCGCGCTTAGATGGACGTCTAAAAGAACGAAATGTTactaaaaatgtttataaatgcGTAGAGTGTCGATACGAATCTAATTACAAAAGACATCTGCAGCAGCACATCAAAATCATACATCTCAATGAAAAGAAATACAAGTGCCCAGAATGCGAACACGAGACTGCTTACAAATTCCACTTGGAAGGTCATATACGAGCGAAGCATCGGAACGAGAGGAACTACGCATGCGCGGAATGCGAATTTAAGAgtagttttaaacaaaaactgaaAGAACACGTGAAAGTAAAACATCGCAACGAAAAGAATTTCAAATGTACTGAATGTGAATATAAAACAGCTTACAGACAAGCGATAGAGATACATATAAAGAGACACAAGAACGAAAGGGATTACCAGTGTGCAGACTGTGAATTCAAAGCTGTTTGCCGCACATCTTTGATAAGTCACATAAAGGCAAGGCACACTACCGAGAAGAAttgttacaaatgttcagaatgTGATTTTAAAGCGACTGCCAGGTTGTATTTAAAAGATCACATAAGAAGGAAACACATCAACGAAGACGAGGTACACGAATGCGTTGATTGCGACTTCAAAACTAGGTACGAGGTAAACCTACACGAACATGTAAGACTCATACATCTTAACGAGAAGAAATACAAGTGCGAACTGTGTGAATACGAGAGTGGTTACAAGTGGAACATTGATAGACATGCGAAGGCGAAACATGTTCAAGATGAAGGTTATAAGTGCAGCGAGTGTGATTTCAAAAGTACTTGCATGTCGACCTTGACGACGCACAAGAAAGCGGAACACGATCGCATAAGAAGGAAACACATCAACGAAGACGAGGTACACGAATGCGTTGATTGCGACTTCAAAACTAGGTACGAGGTAAACCTACACGAACATGTAAGACTCATACATCTTAACGAGAAGAAATACAAGTGCGAACTGTGTGAATACGAGAGTGGTTACAAGTGGAACATTGATAGACATGCGAAGGCGAAACATGTTCAAGATGAAGGTTATAAGTGCAGCGAGTGTGATTTCAAAAGTACTTGCATGTCGACCTTGACGACGCACAAGAAAGCGGAACACGTCAAGGAGAAAGAATATAAATGTACAGAATGCGCGTTCAAGAGTTGTTACAAGTCAAACCTAGCTGGGCATGTTAGGCGGAAACATCATAGGAGAAAGAGTATGAGTATAAGTCTGGAGGATGTGGATTCGAAACTGGCTATTGAGAATATTCAAATTGACATATAA
- Protein Sequence
- MIFFFRQTLISPLNLQRVRAEKYSSTSEEDHKSPQRLHQNKATYKTNLKISASEKKYKCSECEYSAAYKSLLKNHIKAKHVGEKQYKCVDCGYETIYKRHLETHITVRHLREKQFKCPECDYKTGYKSRLSRHMKAKHVTFQKIDSHIKSRLDGRLKERNVTKNVYKCVECRYESNYKRHLQQHIKIIHLNEKKYKCPECEHETAYKFHLEGHIRAKHRNERNYACAECEFKSSFKQKLKEHVKVKHRNEKNFKCTECEYKTAYRQAIEIHIKRHKNERDYQCADCEFKAVCRTSLISHIKARHTTEKNCYKCSECDFKATARLYLKDHIRRKHINEDEVHECVDCDFKTRYEVNLHEHVRLIHLNEKKYKCELCEYESGYKWNIDRHAKAKHVQDEGYKCSECDFKSTCMSTLTTHKKAEHDRIRRKHINEDEVHECVDCDFKTRYEVNLHEHVRLIHLNEKKYKCELCEYESGYKWNIDRHAKAKHVQDEGYKCSECDFKSTCMSTLTTHKKAEHVKEKEYKCTECAFKSCYKSNLAGHVRRKHHRRKSMSISLEDVDSKLAIENIQIDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -