Asol104048.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- -
- Assembly
- GCA_963170755.1
- Location
- OY720680.1:48329275-48351343[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.9 2.3e+03 2.6 0.5 2 20 50 68 50 68 0.92 2 13 0.00021 0.069 16.8 2.0 1 23 593 616 593 616 0.94 3 13 4.3e-06 0.0014 22.1 4.7 1 23 622 644 622 644 0.97 4 13 0.0042 1.4 12.7 2.4 1 23 651 674 651 674 0.96 5 13 0.00023 0.075 16.6 5.0 1 23 681 704 681 704 0.95 6 13 0.00012 0.039 17.6 0.5 3 23 712 732 711 732 0.97 7 13 0.079 26 8.7 2.9 3 23 739 760 737 760 0.94 8 13 0.044 14 9.5 1.8 2 23 777 799 776 799 0.95 9 13 1.1 3.7e+02 5.0 0.1 3 23 804 825 803 825 0.92 10 13 0.0017 0.57 13.9 0.7 1 23 831 853 831 853 0.98 11 13 0.00043 0.14 15.8 1.3 1 23 858 880 858 880 0.95 12 13 0.53 1.7e+02 6.1 0.6 1 23 886 908 886 908 0.95 13 13 1.9 6.1e+02 4.3 5.4 1 23 914 936 914 936 0.97
Sequence Information
- Coding Sequence
- ATGTCGAGAGCATGCTGTGTTTTTGGTTGCTCATCAAAAAGGGGTGTACCAGGCCATAGGTTTCCAAAGGATGAATCTACATTTAATTTATGGAAATCGGCAGTGTTTTCTCCAAAAGTTGATAAGCTGAGTAATAAGGATTTGAGAAAGTGTGTAGTGTGCTATCGTCATTTTGATGAGAGTGAGTATATTCAGTCACATCAATGGAGAAAACTTAAGCCTGGTGCATTTCCAACATTACATTTACCCTTAAAAGCAGATATTGATAGAATTATGCAAGAATGTGGAAAAATTAATTCCACGACCTTTACTGAAAAGGGATCAGCATCGCTACCTTCAGTTGAAAAGCAAACGAACAGTCTGCTTCGCATCAAGATTTCTAATGAACCTGATCCTCTTGATATAAGTAATGAAATTTCTAGTCAACTACCAGTAGAAACGGAAAAACTTTCAACTGCGGGTATTGACTTACCAATAGATAACAAACAATCAAAGTCGGATATTTCACTCCCACCGCCTGAGATCAACTATATTCTACTGTCAGGATCAAAAATTACTGCCTCGCCAATCCAAAAAGTTAAAGGTATCCACGAGAAGACATCTAGTGATAGTGCAGTCAGTACTTACAAGGTAGTATTGGGTAAATCGAAGGAATCGGAAGCAGACGATGATATTTCGTTAGTGGAAACGCCTGAAGTTTTTATCGATTTGTGCGAGGATGAAACTAATGATGCACTTGAAAATAAAGAGAAACTGCATTCTTCAGCTAAAAAAACAAATATAGgtgCAGCTACCTACAGCAAAAAGGATAAATTTCTAAAGGATACATTCCATTTAACACCAGAAAACATTGGTCATATATGTAGAGCATGCTTAAAACAGAAAGATGCCTTACACATGACTGAAAACAAACATGAGGAGCATACATTCAGCGAAATATTAGAAATGTGTTCGGGTATTAAGtTAGAAGAGGAGCCAAGCCTATCTCCATACATTTGTCAGGATTGCATTAACGAATTGCTGCAGGCATATAACTTTAGGGAAAAGTGTTTAAAATCTCAGCAAACACTACTCAAATATAAAGCTTACTTAGATAAATCTGACCAGAAACAAAGATCTGAGACCGAAAGACTAAGAAATGTAACGCTTAGATTTCACGATTACGAAAACATATTGAATGAAGAAGATGTTAACAGTATAACCCCTCGTAAACAACAGATTGAAGCTACTGAACAACTAGATCCTAGTACCAACCGTCTTGCTAAAAAACGCTTTTATTTACTAAAAGGTAAACTCAGTGGTACGGAAGGTTTCAAAGGCGACGTGAATGTAACGGAAATTGACGAAACGAACGCAAAAACATTAATGTGTGACACTCAACAAACTGCTGTATCATTACAAGTTGGTAACGCAATTTGCAATATAAAAAAAGCAGTTGTGCAACCTGAAAAAGATGATCGTGGTAACGGTAGCGTAAATATACCAAAAACTTCAATCGTGATCAAGAGTCCGAATAAACGCAAAGTTATCCCATACTCTGTGCTTTTGAGGCCCGCTATAAATTCAATTCTTTCTGGTAGAATTACCAATCTAAACTCTCGCATATTAAAGACGAAAAAACCGTCTAGAAAACGTAAGAGAAACCCGGATAAAGTTCCAAAAATAAGAGATAAGAAACCTGTCATACCTGGTAATTGTCATATTTGTAATGAACCGCATAATACTTTAGCAGAATATAGACAACATTCACGTGTTACTAAGCATTATCTTAATCCGTACGTTTGTGAAACTTGTGGAAAAATATACCCGGATCGACACCATTTGAAGACGCACAGCCTCATAAGCCACGAGAATCGCAAATCCCATATGTGTGAAGTATGTGGTAAATGTTTCAAAACTCGTGGCTATTTGCGCATACACTTGAAGACGCACGATGGAGAAAGAAAAAGATTTGCCTGTCGGACATGTGGTAAAACTTTCCTTACGCTTAGAGAACTTGCCCACCATAGGAGAATGActcatactacggttgagaagaagCATTGTTGTGAATACTGTGGAGAATTTTTCGCTAGACCGGATACATTAAGACATCATCGAAACAGTGTGCATTTAAAAGTAAAGCATGTTTTCTGTCAAGTTTGTGGAAAAGGTTACCAATACGCGAGTACCTTAAAGAAACATATGGTTACACATTCAACCCATTTGATTAACTGCAACCTTTGCAATAAAACTTTTAAAGCTGATCACAGATACGAGCAACACATGAAAAATCAACATCCAGGTGCTACATGGGAGTCTAAGGAAGACGACGAAATACAAACTATGAGCTGTGATTATTGCGATTTTGTCTGCAAAAATAAACAATCACAGACCGTGCACGTCAAAGTCGATCACGAGGCcaatatatgtttatattgtgATAATTTATTTGAAACGGCAGACGAATTGGGGAATCACACGGTCAAGTTGCACGATAGCATTCCCGACTTTAGTTGTCGATATTGTGGAAGATCTTACGAAGAAATTCCTTCGTTATATAATCATTTAAAAACACACAAACAGAAATTTTATCAGTGCAATGTATGTTTCAAAAAGTTTGTGAACTCGGTGCGTTTGAAAATTCACATGGTATTTCATACACGTGAGAAAATGTTTGCTTGTCAGTTTTGTGACAAAGATTTCCTATATAGTTCCAGTCGTGTTATACACGAAAGGATACATACAGGCGAGAGGCCGTACGTTTGTGATATTTGTGGCAAGGGGCATGTTTGTATTAGTTCTTTCAAAAGACATAGGAGAACGCATATATTACCAACCCACACTGATGAGTCATTGATAAACGAAGATGCAGTTGCTAGTATTGAACTTAAAAATGAATAA
- Protein Sequence
- MSRACCVFGCSSKRGVPGHRFPKDESTFNLWKSAVFSPKVDKLSNKDLRKCVVCYRHFDESEYIQSHQWRKLKPGAFPTLHLPLKADIDRIMQECGKINSTTFTEKGSASLPSVEKQTNSLLRIKISNEPDPLDISNEISSQLPVETEKLSTAGIDLPIDNKQSKSDISLPPPEINYILLSGSKITASPIQKVKGIHEKTSSDSAVSTYKVVLGKSKESEADDDISLVETPEVFIDLCEDETNDALENKEKLHSSAKKTNIGAATYSKKDKFLKDTFHLTPENIGHICRACLKQKDALHMTENKHEEHTFSEILEMCSGIKLEEEPSLSPYICQDCINELLQAYNFREKCLKSQQTLLKYKAYLDKSDQKQRSETERLRNVTLRFHDYENILNEEDVNSITPRKQQIEATEQLDPSTNRLAKKRFYLLKGKLSGTEGFKGDVNVTEIDETNAKTLMCDTQQTAVSLQVGNAICNIKKAVVQPEKDDRGNGSVNIPKTSIVIKSPNKRKVIPYSVLLRPAINSILSGRITNLNSRILKTKKPSRKRKRNPDKVPKIRDKKPVIPGNCHICNEPHNTLAEYRQHSRVTKHYLNPYVCETCGKIYPDRHHLKTHSLISHENRKSHMCEVCGKCFKTRGYLRIHLKTHDGERKRFACRTCGKTFLTLRELAHHRRMTHTTVEKKHCCEYCGEFFARPDTLRHHRNSVHLKVKHVFCQVCGKGYQYASTLKKHMVTHSTHLINCNLCNKTFKADHRYEQHMKNQHPGATWESKEDDEIQTMSCDYCDFVCKNKQSQTVHVKVDHEANICLYCDNLFETADELGNHTVKLHDSIPDFSCRYCGRSYEEIPSLYNHLKTHKQKFYQCNVCFKKFVNSVRLKIHMVFHTREKMFACQFCDKDFLYSSSRVIHERIHTGERPYVCDICGKGHVCISSFKRHRRTHILPTHTDESLINEDAVASIELKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -