Basic Information

Insect: Amphimallon solstitiale
Gene Symbol: Prdm9_2
Assembly: GCA_963170755.1
Location: OY720677.1:18338439-18342269[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.8 6e+02 4.4 1.2 1 21 272 292 272 293 0.92

2 17 0.027 9 10.1 1.6 1 23 380 402 380 402 0.98

3 17 0.00014 0.047 17.3 1.2 1 23 408 431 408 431 0.96

4 17 0.019 6.1 10.6 1.1 2 23 453 475 453 475 0.98

5 17 0.0004 0.13 15.9 1.4 1 22 481 502 481 502 0.96

6 17 0.17 56 7.6 5.9 1 23 532 555 532 555 0.98

7 17 0.003 0.99 13.1 0.4 1 23 561 584 561 584 0.98

8 17 0.011 3.5 11.4 1.2 1 23 590 613 590 613 0.94

9 17 5.5 1.8e+03 2.9 2.8 1 23 619 642 619 642 0.96

10 17 5.4e-05 0.018 18.6 3.0 1 23 648 671 648 671 0.98

11 17 0.049 16 9.3 2.6 1 23 716 739 716 739 0.98

12 17 2.2 7.4e+02 4.1 4.6 1 21 745 765 745 766 0.95

13 17 0.0071 2.3 12.0 6.3 1 23 823 846 823 846 0.98

14 17 0.51 1.7e+02 6.1 1.5 1 23 852 875 852 875 0.95

15 17 0.009 3 11.6 4.6 1 23 881 904 881 904 0.98

16 17 0.16 53 7.7 6.1 1 23 910 933 910 933 0.98

17 17 0.17 55 7.6 4.7 1 23 939 962 939 962 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.8	6e+02	4.4	1.2	1	21	272	292	272	293	0.92
2	17	0.027	9	10.1	1.6	1	23	380	402	380	402	0.98
3	17	0.00014	0.047	17.3	1.2	1	23	408	431	408	431	0.96
4	17	0.019	6.1	10.6	1.1	2	23	453	475	453	475	0.98
5	17	0.0004	0.13	15.9	1.4	1	22	481	502	481	502	0.96
6	17	0.17	56	7.6	5.9	1	23	532	555	532	555	0.98
7	17	0.003	0.99	13.1	0.4	1	23	561	584	561	584	0.98
8	17	0.011	3.5	11.4	1.2	1	23	590	613	590	613	0.94
9	17	5.5	1.8e+03	2.9	2.8	1	23	619	642	619	642	0.96
10	17	5.4e-05	0.018	18.6	3.0	1	23	648	671	648	671	0.98
11	17	0.049	16	9.3	2.6	1	23	716	739	716	739	0.98
12	17	2.2	7.4e+02	4.1	4.6	1	21	745	765	745	766	0.95
13	17	0.0071	2.3	12.0	6.3	1	23	823	846	823	846	0.98
14	17	0.51	1.7e+02	6.1	1.5	1	23	852	875	852	875	0.95
15	17	0.009	3	11.6	4.6	1	23	881	904	881	904	0.98
16	17	0.16	53	7.7	6.1	1	23	910	933	910	933	0.98
17	17	0.17	55	7.6	4.7	1	23	939	962	939	962	0.97

Sequence Information

Coding Sequence: ATGACTGAACAACTTGTAGAATGCAATTTGAATATGTTTTCGGAAAATACATCAAATATAAAACAAGAACTGGACGCCGACGATTATCTAAATGATAAAGTGTATGTTCATGAAACTATTGTAAGTGATATTAAAGTAAAAAATTGTCCCAGAGATGATCcaattgaagaaaatagaatGTCGGATGTGGACAATATCAAAACAGAGTTATCACCACAAACAGCATGTTATATCATAAAAGATAGTCTTAGAGCAGAAGCTGAGACTGGTAATCcagatataaaaattgaattcaATAACGAATTGCTATTTTGTGACCACTGCCTTGAACATTACCAAGATTATTGTTCCAAGTGTAGCATGCTTGTGTGTATCTTGAACAAAAATGGTCTCACTGATATACACAATACATCAAGTGAAGAATTACCAAACGATATTCTAGAAATTAGAATACATTCTGGGCATGTTGGAGTATTTGCTTTGAAATGTATTCCTAAAGGTGTAAGATTTGGTCCTTTCCTTGGAGTCAGTGCTTCAGAATGTTCCTGGAGATTAAAAAGTGGAAAATTCATATTGAGTGAGGAGAAATCAACTtgtttaaattggatgcagtatatCAATCCAGCCAAGAGTGCCTCTGAACAAAATCTACTTGTATTTCAGACCGACGAAAGACTGTATTATCGCACTATTCATAAGATCTATGAAGGAGAAGAATTATTAGTGTATTTTGGTAATGAATATGTAGacaatttaaatgaaaatattgaaatggTTCTTATTCCACATACTGAAAGTGACACTAAAGATGTGTATGCTTGCACATTTTgttgccttggattcagctcaaGAGTAGATCTGGTCAAACACAAAAGCACCTGCCTCAAAGAAACTAGTCGAGAATTTTCTATTAAAGGTAATCTAAACAGTTTTAAGTTAGCTATATGGCAAAACATTACATCAACATTACATCTTTGGATGTGCTCATTTTGCAAAATCCATTTAGATGCAAAGGAATACATGGAGTACCATATGCCCTATTGTTCAGAGAGATATACCAGGAAACACAATCCATTGGCAGTGGATAATCAAGCGGTAGAATTCAAGAGATCCAAATCACGCAGACTGCTTCAGACATATGAATGTAAGCAGTGTCTATATAAAACGGCTTACAAAGCAGATCTCAAAACTCACACTAACCAACATAACGAAGTGAAAATGTACAAATGTGGTATATGTAACAGGCGATTTAAGAAAAAAGACACAGTAAAGGCACATGTGGAAAAGATGCATATCGGTGTTGAAAAAGGAACATTACCTGATAGTTCTACAAATTACTGTCCTATTGCACAAGAAAAATGCACCATATGTGGATACAAAACCAACATTgagaaatatttaaattaccatataaaaacgaaacatctTCAAAAATTCGATTACAAGTGTGACCTATGTGATTATAAAACTAATTACAAGAGCAGTTTAAATAGACATGTGAAGACAATGTGTTCTACAACTGAAAAACTGGAGGCAAACATCACATGGCATTCGGAAGAAGTTCTTCGTTACACACAAGATGACAGGAAACAATTCAAATGTCTAGAATGCGAGTTTCAAACGAAATATAAACAATGCATGAAGAGGCACATAAGGACGCAACACCTCAAGAAATTCAgatataaatgtgactcttgcgaATATATGGTGGATAGGAAATCGGTTTTAGAAAAACATGTAAAAACAGTACACCTTAAAGTGTATAATTATAACTGTGAAATGTGCGATTGGAAATCTAACGAAAGATCTCATTTGAAGCTGCATGTACAAGCGAAACATTTCGAAGTATTTAAATATAAGTGTGAATCTTGTGCATTTAAGACAAACCGAATGACACGTTTCAAGAGTCACATGAAAGGAAACCATCTTACTGAATTTAAGTATACATGTTCTTTATGCGgatataaaacaaacaacaagaagtatttacaaagtcaTATGAAAACAAATCATCTGgaagaatttgattacaaatgtgataTAATTGCAAATAAGATGAACCAGCAAACAGTTTTAAACAAAGAAGATTTTTCAACAAATAACCAATTGAAAATTCAACATCGCGGACAAGGTTCTGTGAGAGTATACAAATGCTCAAAATGCGGCTTGTGGATAAAAGGCAAATACCATCTGAGAGGACACATGAAAACAAAACATCTTAAAAAATTCGATTACAAGTGTAACTCATGTGAATACCAGACTAACTATAAGTATTGCTTTGAAAGGCATGTCAATAAGACCTGCTCGAAGACTAAGAACTTAGACATTGCAAAACATTGGAAGGAAGTTTCACCTCATACACTAAATGATTCCACACAATTCAAATGTTTACAATGTGACTTTCAAACTAAATACAAACTGTGCATGAAAAGTCATGTGAGAAGACGACACCTTAAAAAAATCTGGTACAAATGTGAGACATGTGAATACAAAGCAGATAAGAAATCACATTTAAAACACCATATTAAAACAAAACATCTCAAAGATTGCAGTTATAAGTGTGAACTGTGTAAATTTGAATCGTATTACAAGAGTGTCTTAAGGATGCACGTAAAAGCAAAACACCTCAAGGAATTCAATCATAAGTGTGAGTTCTGCAAATACAAAACTAACAGGAAGCTAGATCTGGAAATTCATATGAAAACTAAACACCTTATGATATTTGATTATCAGTGCGATTCTTGTGAATATAAGACTAATTACAGGTGCGATTTCAACAAACATATGAAATCGAAGCATCTTAAGGAATTTAATTATAAGTGCGGGCAGTGTgagtataaaacaaataaaaaggaGTGCTTAAAGAATCATACAGAAATGAAACATATTAGTTTTGAGAAGAAAGAATTACAAAATTTCTTCACAAGTGAATATTCAACAgtgtaa
Protein Sequence: MTEQLVECNLNMFSENTSNIKQELDADDYLNDKVYVHETIVSDIKVKNCPRDDPIEENRMSDVDNIKTELSPQTACYIIKDSLRAEAETGNPDIKIEFNNELLFCDHCLEHYQDYCSKCSMLVCILNKNGLTDIHNTSSEELPNDILEIRIHSGHVGVFALKCIPKGVRFGPFLGVSASECSWRLKSGKFILSEEKSTCLNWMQYINPAKSASEQNLLVFQTDERLYYRTIHKIYEGEELLVYFGNEYVDNLNENIEMVLIPHTESDTKDVYACTFCCLGFSSRVDLVKHKSTCLKETSREFSIKGNLNSFKLAIWQNITSTLHLWMCSFCKIHLDAKEYMEYHMPYCSERYTRKHNPLAVDNQAVEFKRSKSRRLLQTYECKQCLYKTAYKADLKTHTNQHNEVKMYKCGICNRRFKKKDTVKAHVEKMHIGVEKGTLPDSSTNYCPIAQEKCTICGYKTNIEKYLNYHIKTKHLQKFDYKCDLCDYKTNYKSSLNRHVKTMCSTTEKLEANITWHSEEVLRYTQDDRKQFKCLECEFQTKYKQCMKRHIRTQHLKKFRYKCDSCEYMVDRKSVLEKHVKTVHLKVYNYNCEMCDWKSNERSHLKLHVQAKHFEVFKYKCESCAFKTNRMTRFKSHMKGNHLTEFKYTCSLCGYKTNNKKYLQSHMKTNHLEEFDYKCDIIANKMNQQTVLNKEDFSTNNQLKIQHRGQGSVRVYKCSKCGLWIKGKYHLRGHMKTKHLKKFDYKCNSCEYQTNYKYCFERHVNKTCSKTKNLDIAKHWKEVSPHTLNDSTQFKCLQCDFQTKYKLCMKSHVRRRHLKKIWYKCETCEYKADKKSHLKHHIKTKHLKDCSYKCELCKFESYYKSVLRMHVKAKHLKEFNHKCEFCKYKTNRKLDLEIHMKTKHLMIFDYQCDSCEYKTNYRCDFNKHMKSKHLKEFNYKCGQCEYKTNKKECLKNHTEMKHISFEKKELQNFFTSEYSTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -