Basic Information

Insect: Amphimallon solstitiale
Gene Symbol: -
Assembly: GCA_963170755.1
Location: OY720675.1:162537404-162538369[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0049 1.6 12.5 2.7 2 23 95 117 94 117 0.96

2 8 0.016 5.2 10.9 2.2 1 23 123 145 123 145 0.98

3 8 0.00011 0.037 17.6 0.6 1 23 151 173 151 173 0.99

4 8 1.7e-05 0.0057 20.2 2.2 1 23 179 201 179 201 0.97

5 8 0.0097 3.2 11.5 5.9 1 23 214 236 214 236 0.97

6 8 0.00018 0.058 17.0 1.1 1 23 242 264 242 264 0.98

7 8 6.7e-06 0.0022 21.5 2.1 1 23 270 292 270 292 0.98

8 8 1.8e-05 0.0061 20.1 1.3 1 23 298 321 298 321 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0049	1.6	12.5	2.7	2	23	95	117	94	117	0.96
2	8	0.016	5.2	10.9	2.2	1	23	123	145	123	145	0.98
3	8	0.00011	0.037	17.6	0.6	1	23	151	173	151	173	0.99
4	8	1.7e-05	0.0057	20.2	2.2	1	23	179	201	179	201	0.97
5	8	0.0097	3.2	11.5	5.9	1	23	214	236	214	236	0.97
6	8	0.00018	0.058	17.0	1.1	1	23	242	264	242	264	0.98
7	8	6.7e-06	0.0022	21.5	2.1	1	23	270	292	270	292	0.98
8	8	1.8e-05	0.0061	20.1	1.3	1	23	298	321	298	321	0.97

Sequence Information

Coding Sequence: ATGAGACGTCCAATAAGAATAACAAGAaccagaaataataataataataacaataaatggaGAAAAAGATGCAGAAATAACTTACGAAGAAAAGATTACAGTCGGGTTAAGTCTGATACATTTGCTTTATTCCTGCGCACAAAGATTAATTTTATGAAGTTACTAGGACTGAAATATATATCACATGCAATAGAGAATATTGCTTTAGAAGACAAAAATGACAATATATTTAGTAACATTGAtctaacaataattgatgattctATTGATATAATATCAATAAAATGTTCTAAATGTGAAATCCCTTTTTGCAATAAAAAAGCATATAATTTACATTTATCAAAACGACATCCTGATCTTCTAcagttttattgtaaaatatgcTCAATCAAATTTTTAAACAGAACTCTGCTTCAAGAACATCGATCTAAGCACAGAGGCAAAAATCCTTATACATGTGCAAAATGCAATATACGCTTAAAAACCTTGGATCTGTTCATAGCACATATGAGGAAACATCAAGGAAAGTCACCTTATGCTTGTCATATCTGCAAAAAGTCATTTGATAAAAGTATTGATTACAAAAGACATTTATTAGTTCATGAAATGAAACCATATGTAAAGTCTAAACGTAAGTTTTTTGCATGTACAGACTGTTGTAAGCAATTCCAAAAGCCTTGTGACCTGAAAAGGCATCAGAGAGTTCACACAGGTGAAAAACCATTTGTGTGTGCTGTATGTGGAAGTAAATTCCAACAAGCACATAACATGACCAAACATATGACCATACATacaaaagaaagaaaatactGCTGTGAGATTTGTACAAAAGAATTTGGCCGTAAAGATGTTCTTACGAGACATATGTTAACTCATACTATTAATAAGCCATTTTCTTGTGATGTTTGCAGAAAAACATTTGCACGAGCTGTACAACTTACCACTCATAAAATGAAACGTCACTGA
Protein Sequence: MRRPIRITRTRNNNNNNNKWRKRCRNNLRRKDYSRVKSDTFALFLRTKINFMKLLGLKYISHAIENIALEDKNDNIFSNIDLTIIDDSIDIISIKCSKCEIPFCNKKAYNLHLSKRHPDLLQFYCKICSIKFLNRTLLQEHRSKHRGKNPYTCAKCNIRLKTLDLFIAHMRKHQGKSPYACHICKKSFDKSIDYKRHLLVHEMKPYVKSKRKFFACTDCCKQFQKPCDLKRHQRVHTGEKPFVCAVCGSKFQQAHNMTKHMTIHTKERKYCCEICTKEFGRKDVLTRHMLTHTINKPFSCDVCRKTFARAVQLTTHKMKRH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00990807;
90% Identity: -
80% Identity: -