Asol048725.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- set-17
- Assembly
- GCA_963170755.1
- Location
- OY720677.1:25423214-25439560[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.5 1.8e+03 2.9 3.3 1 21 226 246 226 247 0.93 2 20 0.82 2.7e+02 5.5 0.6 2 20 263 281 262 283 0.95 3 20 0.0093 3 11.6 3.2 1 23 315 337 315 337 0.98 4 20 0.0032 1.1 13.0 3.7 1 20 343 362 343 364 0.94 5 20 3.7 1.2e+03 3.4 4.1 1 23 377 400 377 400 0.97 6 20 2.5e-05 0.0082 19.7 0.9 1 23 406 429 406 429 0.97 7 20 0.00011 0.035 17.7 1.4 1 23 448 471 448 471 0.97 8 20 0.15 50 7.8 3.3 1 23 477 500 477 500 0.97 9 20 0.0039 1.3 12.8 2.6 1 23 514 537 514 537 0.95 10 20 0.045 15 9.4 0.4 1 23 543 566 543 566 0.97 11 20 2e-06 0.00066 23.1 0.6 1 23 572 595 572 595 0.97 12 20 0.5 1.6e+02 6.2 1.9 1 23 601 624 601 624 0.97 13 20 0.0024 0.8 13.4 0.8 1 23 630 653 630 653 0.98 14 20 1.3 4.4e+02 4.8 6.3 1 23 659 682 659 682 0.96 15 20 0.00022 0.072 16.7 2.0 1 23 688 711 688 711 0.98 16 20 0.026 8.6 10.2 2.0 1 23 717 740 717 740 0.96 17 20 0.74 2.4e+02 5.6 1.6 1 23 746 769 746 769 0.95 18 20 0.066 22 8.9 1.7 1 23 775 798 775 798 0.98 19 20 0.00097 0.32 14.7 1.0 1 23 804 827 804 827 0.98 20 20 1.5 4.9e+02 4.7 2.2 1 23 833 856 833 856 0.95
Sequence Information
- Coding Sequence
- ATGAAAGAATTATTGCCATCTGATATGGCTAGTGCTACTAGTGCCATCAAAATGGAAGatgaaataaacaatataaaaacagaATTATCATGCGACATAAATAGTGTTAAAATAGAAGATGAAATTAGTAAAATGGTTGatgtaaaaattgaatttgaCAATGGTTTGTTATTTTGTGAAGAGTGTGATGCATATTATGGAGATTATTGCAtagaatgtggaatgcttgtgcatattttaaacagAAATACTCTGAATAACACAGAAAGCACAGCAGTTGAGGAAATACCagagaatattttagaaatatcagATTTGTTTGGAAAATTTGGAATATATGCTTCAAAAATTATTCcggaaggtgtaaaatttggccCTTTTGTTGGCGTTAGTAGTTCAGAGTGTAGTTGGAAATTAAAACGAGGAAAAATTGTTGCTGCTGGGGAAAACTCAAAGTTTCTCAGTTGGATGCAATATATTAACCCAGCCAGGAATGCTTTTGATCAAAACCTGAAAGCATTTCAATGTGAAGGTAAACTTTATTATTGCAGTACTCGTCAAATCCAAATAGGTGAGGAATTATTGGTGCATTTTGGCACAAAACATGAGGACAGCCTCATTAAGGATCTCGAAGTAGATTTTATCCCAAGTGTAGAAGCCGAAACAAGAAATGTGTTTGCCTGTACATTTTGTTGCCTCGGATTCAGCTCAAGTGTATATTTGACCCATCACAAAAAGCTCTGCCCAAAGGAAACCAATGGGAACTTTTTAATTACAGAACTTACGCAATGCCCATTTTGTAAAATCTATTTGCATCAGGCGGAATATCTTGAACATCACATGGTTTATTGTCGGGATAGAAATGACAGAAAATACGATCCGCCGGTATCAGACAATCAAAAAGCAGAAGTGAAAAGAAACAAAAGCCGACGCCGTCAGTTATATTCATGTACGCAATGCAAATACAGAACAAAGTACAAAGGAGATCTTAAAATCCATAGTAATAAACATTACGAAGTGAAAAGATATAAATGTAGAATTTGTAATAGACGATTCAAGACAAAAAGATGCCTCATGCTGCATAAAGAAAGTTCACCTTTATTAGCGAAATGTTTGAAAGACTTTACGTATAAGTGTCATTCCTGCCCATTTTTAACGAACAAGAAAAATTATTGGGATCGCCATATAAAATCGAAACATTCGAAGGAGCTCCTTTATAAATGTGAGTTTTGTGATATTGAAACAACTCGGAAAGATAATTTAGACAGACATATGAGAGCCAAACATGAATTCATAACAAACCGTAGGTATCTTCTAGATAAACATTCGAAGGAGCGCCTTTATAAATGTGAGTTTTGTGATATTGAAACAACTCGGAAAGATAATTTTGACAGACATATGAGAGCCAAACACTGGGAAAAATGCAGTTATAAGTGTAAGTTGTGTGAATTCATAACAAATCATAGGTATCTTCTAGATAACCATGTGAAGTCAAGACACAGGGAACAACCGGTTTATAAGTGTGATAAGCGATTAATttataaatgtgacatttgtggGTGTGTGAAAAGTCAAAAGTCCAGATTAAAAAAACACATGGAAGAGCAACATTCGGTGAAGTTCCATTATAAGTGTGAATCATGTCCGTTTATTACGAATAAGAAGGATGATTTGGAAGGACATGTGAAATCGAAACATTCGAAAGAAGTCAATTATAAATGTGAGACTTGTGGTATCGAGACGACTCGGAAAgaaaatttagaaagacatatgcGAGCCAAACATGGCGAAGAATTTcgttataaatgtgactcgtgcgaatttataACAAACCGCAAATATCGTTTAGATTACCACATAAACTCAAGGCACAGGGAGCAACCCGTTTATGAGTGTGATAAGTGTGGTTATAAAGCAAAGAAGAAGCTATCTTTAGAAATTCATATAAAATCGAAACATCTCAAAGAATTTAATCATGAATGTGACAAATGTGATTATAAAACAAACCGTTCGGATTTGTTTCGATGCCATATAAAATCGAAACACCTGAAAGagtttaattttaagtgtgataAATGCGATTACGTGACTTCCCGCAGGGATCTCTTTGAATATCACGTACGAacgaaacatttgaaggaattcgatTATAATTGTGACGCATGTGAGTTCGGAACGAACAGGAAacataatttagaaaatcatataaaaaacaaacatttgaaagaattcgattaTGAGTGTGATAAATGTGATTATAAAACTAATATGGCGAGCGGCTTCGAATTTCACAccaaaactaaacatctgaagcaATGCAGTTATGAATGCGCCAGTTGTAAATTCAAAACAAACTACGAGAAGAATTTACAAATACACGTGAAGACGAAACAcctgaaagaatttgattataaatgtgagtcGTGTGAGTTTGGGACGAACACCAAGGCGACCTTAGAGAGACACATAAAGACGAGACATCTTAAACAGTTTATGTATCTGTGCGGACTTTGCGAGTACAAAACTAATAAGACGACTTGCTTAGAAGTGCACGTGAGAAAAAACCATCccgagtttgattataaatgtgacatttgcAAACATAAAGCATATGACAAGAGGTGTTTGCACAGAGGAACTAAAACATGA
- Protein Sequence
- MKELLPSDMASATSAIKMEDEINNIKTELSCDINSVKIEDEISKMVDVKIEFDNGLLFCEECDAYYGDYCIECGMLVHILNRNTLNNTESTAVEEIPENILEISDLFGKFGIYASKIIPEGVKFGPFVGVSSSECSWKLKRGKIVAAGENSKFLSWMQYINPARNAFDQNLKAFQCEGKLYYCSTRQIQIGEELLVHFGTKHEDSLIKDLEVDFIPSVEAETRNVFACTFCCLGFSSSVYLTHHKKLCPKETNGNFLITELTQCPFCKIYLHQAEYLEHHMVYCRDRNDRKYDPPVSDNQKAEVKRNKSRRRQLYSCTQCKYRTKYKGDLKIHSNKHYEVKRYKCRICNRRFKTKRCLMLHKESSPLLAKCLKDFTYKCHSCPFLTNKKNYWDRHIKSKHSKELLYKCEFCDIETTRKDNLDRHMRAKHEFITNRRYLLDKHSKERLYKCEFCDIETTRKDNFDRHMRAKHWEKCSYKCKLCEFITNHRYLLDNHVKSRHREQPVYKCDKRLIYKCDICGCVKSQKSRLKKHMEEQHSVKFHYKCESCPFITNKKDDLEGHVKSKHSKEVNYKCETCGIETTRKENLERHMRAKHGEEFRYKCDSCEFITNRKYRLDYHINSRHREQPVYECDKCGYKAKKKLSLEIHIKSKHLKEFNHECDKCDYKTNRSDLFRCHIKSKHLKEFNFKCDKCDYVTSRRDLFEYHVRTKHLKEFDYNCDACEFGTNRKHNLENHIKNKHLKEFDYECDKCDYKTNMASGFEFHTKTKHLKQCSYECASCKFKTNYEKNLQIHVKTKHLKEFDYKCESCEFGTNTKATLERHIKTRHLKQFMYLCGLCEYKTNKTTCLEVHVRKNHPEFDYKCDICKHKAYDKRCLHRGTKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -