Asol018167.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- -
- Assembly
- GCA_963170755.1
- Location
- OY720675.1:163266218-163281355[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.038 12 9.7 5.9 2 23 254 275 253 275 0.98 2 12 1.5 5e+02 4.6 3.0 1 20 284 303 284 305 0.90 3 12 0.00068 0.22 15.2 1.4 1 23 528 550 528 550 0.97 4 12 0.00012 0.041 17.5 0.3 1 23 555 577 555 577 0.98 5 12 0.00077 0.25 15.0 0.7 1 23 582 604 582 604 0.98 6 12 6.9e-05 0.023 18.3 2.0 1 23 610 633 610 633 0.96 7 12 0.013 4.4 11.1 1.6 1 23 638 660 638 660 0.99 8 12 4.4e-05 0.015 18.9 0.4 1 23 668 690 668 690 0.96 9 12 0.0024 0.78 13.5 1.3 1 23 695 717 695 717 0.98 10 12 7.5e-06 0.0024 21.3 0.4 1 23 723 746 723 746 0.97 11 12 0.015 4.9 10.9 6.2 3 23 753 773 751 773 0.97 12 12 0.083 27 8.6 0.3 1 23 780 803 780 803 0.97
Sequence Information
- Coding Sequence
- ATGGAGAACCGCTGCGGGAATCCGAAAGGGTTCCCGCGAGCACTGATTGTCTGCGATCGGTTACACGCGTCTATCCATCCAAGGACTGGTTGCATTGTCTTTCTGTCCATGGCAACGCTTTGCCATCGCGTCGTAGAACCACCCGAGGACGGGAGGGTCGCGTTGACCAGTGCCGGGGCGGATGTCGAGAGACTGAAACCGCGGCGCACGCTAGCTGAAGGGTTAAAACAGTTGGATTGGGAGGTCTGGAAGGAACGCAGGTTCCAGACAGATGTTGGGCCCCGGGTCCCCGACCTGATCGCTATCCGGCCTAACCGGGTGGAGGTGATTGACGCTCAGGTAGTCGCCGCGAAACCTTCGCTCGACTCGCAGCACTGTCGGAAAACATTTAAGTACCGGGACGAGGCTGCCCTCGTCCCACTGGTACGAGAAGCGGTTGCTCCTTTGGGAATAACGAATCCCGACGTAATTTTTGCCAGCGCTACCATCTCCTGGCGCGGTGTTTGGAGCGTGGAGTCTGCACGGTCGCTTCGGGCCCTCGGTTTGGGCAGGAAGCTACTGGGTGAGCTCTCGTGTAATAAAGATAGTGCAACACGTAAAGATGGTGTAGCTTCGCGTATAGACAAAAGAGTTGTACGAACGAATAGTAAGTTGCGTAACGTCAATGAATCTACCAGCCGAAAGAAGACAAAGTGTAATTTGTGTTTGGAATTTGTTTTACATGCTTCAATGCAAACACATATGAAGACCCATAATATGAAGTGTGAGCGATGTGACAAACTCTGTGAAAATCAGCACCAATATCGCCTCCATATGAAAATGCACCGGCAAATAGATAAAAGGAATAAACATTTTTGTAAAATTTGCACTTTAAAGTTTCCAAGttctaaaaaatatttagaacacgCGTGCATGGTGGATGGCGACGAAAAAGTCGAAATTATATGTAATGACATTAATTTTGAGAGTAATAATTCTAGTCTCAATTATAATACACCAAATTCTGTATATAAGTCAGTGTCAGTCTTCTCACGTATAGATAATATCTCAGATATGTTAGACTTTAGAGAAATTAATGAGGATTCTCCTAATAAAGACGTTGTTGAAATTTATGATTCAGAGGATGATTATGTAGAAATACTAAGTCATTGTAATATGTGCCATAAAGAAGTAGACAGTATGTGCAATGAGCAAACTGATACACAATGTTCTTCATCTAAACTTCAGTCTGTTCTTACCAAATCTAATAAAAATCCTAATAACACTGTGGCGTTAATTGCACAGACACCGGATGGTATATCGAAGAAAATAATAGTTAAACTTTCTCAGTTGACCTTAATTAAAAAGGAAGAATACGAAACGTCATTAACAGAAATTAAACAGGAACATGCAGTTCAACATTCAGCATTTAATGAGGATGAGATGAAGGTAGTAGCTAAAATGAATATAGATACTACAAAACATTTTGTTACAAGAGGAGAAGTTAAAAATTTCGAATGTAATAAAAGGTATACAAAATTAGATACATATTCCAAAGAACAAATAAGGGGAGATTCTGATACTTTGGATGGACTTAATGTTTATGATTGTCAAACTTGTGAAAAACGATTTAATTCGTTGTCAAAATATGAGAAACATGTAATATCGCATTCTTTAAAACAATATATATGCAGAATTTGTGGACGAGTATATAAAAACGCAATTATGTTTCAAAGACATGAAAATATGCACAAAAGTTTACGATTCTCTTGTGATTTTTGTAACAGAGAGCTAGCTTCCAAATATCAACTTGATGTTCATATTAGAAGACACAAAGGAGAATTTTCTCACAAATGTAACGATTGCGGTAAAGAATACTATAACAGTAAAGCATTCCGTCAACATATTGAATCAGAGCACAAAGGTATTAGGTATAAATGTTTAATATGTGATTCTACTTTGAGAAGTCGAAGATACTGGAAAGATCACATGAGTAAACATACCGATACCAATGTTAAAAGGTATTTATGtcaaatatgtaataaattttatagtaGTAAGGCTGCTTTGAACGGTCACATGAAAATACATAGTGATGAAAGATTTGAGTGTAAGATATGTGGCAAAAAATCAACTCAAAAGGCTGCTCATTTAGTTCATATGCGCCTTCATACTGGTGAGAAAGATTTCGTTTGTGAAATATGCGGCAAAGACTTTGTTAGAAAAGATACTATGCAAATTCATAAAAGAAGAGTACACGATATATCTAAGTATGGATGTAAATATTGTCAGCAGGAATTTAAAAGTGAACATCATCTCTTAACACACATTCATAGTCACGATGAAGTTGAAAAGAAATTTCCGTGCGAATTTTGTGCCGAGAAATTTATAGATATAAATTTTTTGCGCAATCATGTAAATAAAATGCATGTGGGAAACAAAACCGGTAATGACACTTCAAAAGCACCAACTGGAAATAAGTGTAATAATGAAAAAGATAAGATTTGCCAAGAGATTAATTTGAAATCGTGTATTAAATCAAATGAAGCCACAAAAAGTTTCAACACAAATTATAAGTTTCAAGGTTGCCCCAAGGAATACCTAAGCTTTGTTGACCCTAAATTACATTCGCCTAATCACAAATCATTAAGTGACTACAACTTCTTGTCCTACTACGAAAATTGCAGCGATTTTGAATCCTGTGAACCTACTGCTGAAGCAATtatttgtgaatttaaaacagACAATCTGGTTAAACTACAGCCAGAAGAAACATTAGAACACTTTTGA
- Protein Sequence
- MENRCGNPKGFPRALIVCDRLHASIHPRTGCIVFLSMATLCHRVVEPPEDGRVALTSAGADVERLKPRRTLAEGLKQLDWEVWKERRFQTDVGPRVPDLIAIRPNRVEVIDAQVVAAKPSLDSQHCRKTFKYRDEAALVPLVREAVAPLGITNPDVIFASATISWRGVWSVESARSLRALGLGRKLLGELSCNKDSATRKDGVASRIDKRVVRTNSKLRNVNESTSRKKTKCNLCLEFVLHASMQTHMKTHNMKCERCDKLCENQHQYRLHMKMHRQIDKRNKHFCKICTLKFPSSKKYLEHACMVDGDEKVEIICNDINFESNNSSLNYNTPNSVYKSVSVFSRIDNISDMLDFREINEDSPNKDVVEIYDSEDDYVEILSHCNMCHKEVDSMCNEQTDTQCSSSKLQSVLTKSNKNPNNTVALIAQTPDGISKKIIVKLSQLTLIKKEEYETSLTEIKQEHAVQHSAFNEDEMKVVAKMNIDTTKHFVTRGEVKNFECNKRYTKLDTYSKEQIRGDSDTLDGLNVYDCQTCEKRFNSLSKYEKHVISHSLKQYICRICGRVYKNAIMFQRHENMHKSLRFSCDFCNRELASKYQLDVHIRRHKGEFSHKCNDCGKEYYNSKAFRQHIESEHKGIRYKCLICDSTLRSRRYWKDHMSKHTDTNVKRYLCQICNKFYSSKAALNGHMKIHSDERFECKICGKKSTQKAAHLVHMRLHTGEKDFVCEICGKDFVRKDTMQIHKRRVHDISKYGCKYCQQEFKSEHHLLTHIHSHDEVEKKFPCEFCAEKFIDINFLRNHVNKMHVGNKTGNDTSKAPTGNKCNNEKDKICQEINLKSCIKSNEATKSFNTNYKFQGCPKEYLSFVDPKLHSPNHKSLSDYNFLSYYENCSDFESCEPTAEAIICEFKTDNLVKLQPEETLEHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -