Asol125645.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- Zfpm1
- Assembly
- GCA_963170755.1
- Location
- OY720682.1:20188856-20203347[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.2 66 7.4 3.8 1 23 152 174 152 175 0.96 2 13 0.0064 2.1 12.1 0.1 3 23 257 278 255 278 0.93 3 13 0.00029 0.094 16.3 2.9 1 23 286 308 286 308 0.98 4 13 6e-05 0.02 18.5 2.2 2 23 311 332 310 332 0.97 5 13 0.35 1.2e+02 6.6 1.1 1 10 338 347 338 360 0.82 6 13 2e-05 0.0065 20.0 5.3 2 23 367 388 366 389 0.95 7 13 0.23 77 7.2 1.3 6 23 403 420 401 420 0.95 8 13 0.00017 0.055 17.1 3.8 3 23 427 448 426 448 0.97 9 13 0.93 3e+02 5.3 0.0 2 23 464 484 463 484 0.95 10 13 3e-05 0.0098 19.4 1.7 1 20 490 509 490 512 0.92 11 13 0.0005 0.16 15.6 0.1 1 23 520 542 520 542 0.98 12 13 0.00087 0.28 14.8 3.7 1 23 548 570 548 570 0.98 13 13 0.24 80 7.1 1.5 1 11 576 586 576 587 0.89
Sequence Information
- Coding Sequence
- ATGATCGACATGGACGGCATGAATCTTTTCATAAACAGCGATTTTTTAAATAACCATCTCGTCTCCCAAGTGGACGAGTTCGAGTGCACCAACAGCGAGCGGCCCCGTATAATTCTCAATTTGGGCAGTTTAGAGACGAATTATATCAACCGCGATGCCAACGAGGAGAGTCTGAGTAGGGAGAGCGCTAACATAAGGACAGACGAACACATGCCGCCACGCGGGGAACTATCCGGACAAGAGAGTAACGGTGGTACAAGTGACCTGAACTGGAACAGGCTGCAGTACCAAGACGTGTGCAGCTCCTACGATTTGATCGCTCGGGAGACTTGGAACGATGACATATCCGGTGCTGCGGAACCGAACTCCGTACAAAATCAGTCGAGTCAAATTTTGACAGCGTGCGACGATGATATTCCTACTGTTTCGGGGTTTCGGGAACCGCCCATCACGTATAAGTGTCCTACGTGCGGTGACTCTTTCAATTGTCCTAAAGAAAGGCGGGTACATCAAAGGGAGCATCACAGCGTCGTGGAAAAGAAAGATAAAGAGATCGGTGGTCAGATTGGAGGTAAGAAAGTGAAGAAATTGACAATAAAACCTAAAAAGGCCGACATCAAAACGGAGAACAATTTCGATAACGTTTTCACGAACCGGCTAAAGTTAGAACCGAGCGGTGAAAGTGACAATAATCGCGATGCAGTACAACAAAAGGGCGATATGGAAGTACAAAAGAAGGAAGACGTGGTTGTAAATAACCCGATTATATGCACCGTTTGTGATATGGTCGTGGCGGACAATAACGCCCTGAAACACCATCAATTGGAAGCTCACAATTTGTCTTCGGATATCAAGCACAAATGCAAGACTTGCGAGCAAACGTTTCCCAACGAAGCGAAATACACCGAACATCTGAGGACGCATCCGCTAGAATGTCGTCTTTGCGGTAAATACTTTTACAGGAAGCAGAACATGCAGTTGCACATGAAGAGACATTTAGGCATAAAACCGTACAAATGCAATATTTGCGAGAAGGCGTTCCTGACGAAGCAGAAACACGACGAACACAAAAATATACATACCGGGGACACCCCGATAAAATGTAACATGTGCGACGAGACGTTCAGGAGGCATTCGAATCTGGTGCAGCACCGGAACAGACATCATTTCAATATGAAACGGAAAATGAAGGATTACGTCTGTTTTTGTGGAGAAGTTTTTCACTCCAAACGAAAACTGGCTTGGCACAAAGAAATACACGACCCGAAGCCGAAGGCTTGCACACACTGCAGCGAAAAGTTCATCCACATGTCCAGTCTGACCAGACACATACGGAGGGCACACAATGAACGATTCCTGCCCAACAAGGAGCGGGTATCGGAGAATGTCGAATGTCCGATATGTAAGGGTGTATATTTGCGTTCCTATCTCGACGTTCATGTTCGTAATCACAGCGGCCACAAGCCTTTCACCTGCCTGATCTGCAACAAGAGTTTCACCACCAAGTGGAACCTAAAGCTCCACAAGTGGACGCACGCGTCGAGGACCTCGAAACCGTTCAAATGTGACCAGTGCAAGGGCGCCTTCATCAGGGAATCGGATTACGTCGCTCACATGAACGCCCACAAGAGTGTCAAGCCGTACACATGCAACTACTGCGGGGCGCAGTTTATAAGAAAGTACAATTGCCAGAGGCACGTCAAGGAGCACGAGAAAGTTAAGACGTTTTCCTGCCAGGTTTGCGGAAAAACTTTTCACaggtaa
- Protein Sequence
- MIDMDGMNLFINSDFLNNHLVSQVDEFECTNSERPRIILNLGSLETNYINRDANEESLSRESANIRTDEHMPPRGELSGQESNGGTSDLNWNRLQYQDVCSSYDLIARETWNDDISGAAEPNSVQNQSSQILTACDDDIPTVSGFREPPITYKCPTCGDSFNCPKERRVHQREHHSVVEKKDKEIGGQIGGKKVKKLTIKPKKADIKTENNFDNVFTNRLKLEPSGESDNNRDAVQQKGDMEVQKKEDVVVNNPIICTVCDMVVADNNALKHHQLEAHNLSSDIKHKCKTCEQTFPNEAKYTEHLRTHPLECRLCGKYFYRKQNMQLHMKRHLGIKPYKCNICEKAFLTKQKHDEHKNIHTGDTPIKCNMCDETFRRHSNLVQHRNRHHFNMKRKMKDYVCFCGEVFHSKRKLAWHKEIHDPKPKACTHCSEKFIHMSSLTRHIRRAHNERFLPNKERVSENVECPICKGVYLRSYLDVHVRNHSGHKPFTCLICNKSFTTKWNLKLHKWTHASRTSKPFKCDQCKGAFIRESDYVAHMNAHKSVKPYTCNYCGAQFIRKYNCQRHVKEHEKVKTFSCQVCGKTFHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -