Asol002276.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amphimallon solstitiale
Gene Symbol
-
Assembly
GCA_963170755.1
Location
OY720675.1:3347361-3351447[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0066 2.2 12.1 0.7 1 23 90 113 90 113 0.97
2 20 0.91 3e+02 5.3 3.1 2 23 120 141 119 141 0.97
3 20 0.0099 3.3 11.5 2.8 1 23 147 169 147 169 0.99
4 20 0.0031 1 13.1 3.7 2 23 176 197 175 197 0.97
5 20 0.0032 1.1 13.0 7.1 1 23 203 225 203 225 0.98
6 20 0.015 5 10.9 0.5 1 23 278 301 278 301 0.96
7 20 0.91 3e+02 5.3 3.1 2 23 308 329 307 329 0.97
8 20 0.0099 3.3 11.5 2.8 1 23 335 357 335 357 0.99
9 20 0.0031 1 13.1 3.7 2 23 364 385 363 385 0.97
10 20 1.5 4.8e+02 4.7 9.2 1 23 391 413 391 414 0.96
11 20 0.0031 1 13.1 4.3 1 23 419 441 419 441 0.98
12 20 0.089 29 8.5 0.1 3 20 449 466 447 469 0.94
13 20 0.001 0.34 14.6 0.9 2 23 475 496 474 496 0.96
14 20 0.00021 0.07 16.8 0.7 1 23 502 524 502 524 0.98
15 20 0.0049 1.6 12.5 0.9 2 23 531 552 530 552 0.95
16 20 0.0023 0.74 13.5 1.8 1 23 558 580 558 580 0.97
17 20 0.017 5.5 10.8 0.4 1 23 586 608 586 608 0.96
18 20 0.03 9.8 10.0 3.3 1 23 612 635 612 635 0.96
19 20 0.00038 0.13 15.9 1.6 1 23 641 663 641 663 0.98
20 20 0.12 38 8.1 3.8 2 22 670 690 669 690 0.94

Sequence Information

Coding Sequence
ATGATGGGCGCTTCAGTCAGTGCAACTTCaggaaaaaaaacaaatttcggaTGTGGTGGTTCGATTATGATATGGAGATCTTCCGAGGCTAAGACAGAGTTGGAAGTTATTTATAATGGTTCTATGACCGTAGATAGgcAGTGCATATTATTAGCTCCGGAAGCAGAAACACTACTTTCAACTAAATTAAATAGGCAGCCATATGTACAAAATGAAACTCCCATTTTGAGAGCGGCAACTGTGCATAATCAAGATGGAGACAAGAGATTTGAATGTTTTTTGTGCGAATACGTCACAAACCGCAAAACTCTTTTGGATGCTCACTACCGAAGTGATCATTTTATAGATGGAAAACTTAAGTGCCCGCAATGCGAATATGAGTCTCATCGCAGACACATTCTGAAAGTGCACATGATTAAACATCTAGGCGTTAAACGGTTCAAATGTTTGCAATGTGATTTCACAACTAATTTCACGCGCGGACTCAGGAGACATTTAAACACACACGAGACGGTGAAGAGTCTTAAATGTACGCAATGTGAGTACACAACAAAGCAAAAGGATTGCCTTAAGGATCATCTTGAAACTCATGAGACGGTGAAACGATTTAAATGTTCGCAGTGTGACTACACAACACATCGCAGGCACAATCTTAAGAACCATTTAGCTAAGCACTATACTGCACGTCAAAATACACGCAAgcAGTGCATATTACTAGCTCCGGAAGCAGAAACACTACTTTCAACTAAATTAAATAGGCAACCATTTGATCAAAATGAAACTCCCATTTTGAGAACGGCAACTGTGCATAATCAAGATGGAGACAAGAGATTTGCATGTTTTTTGTGCGAATACGTCACAAACCGCAAAACTCTTTTGGACGCTCACTACCGAAGTGATCATTTTATAGATGGAAAACTTAAGTGCCCGCAATGCGAATATGAGTCTCATCGCAGACACATTCTGAAAGTGCACATGATTAAACATCTAGGCGTTAAACGGTTCAAGTGTTTGCAATGTGATTTCACAACTAATTTCACGCGCGGACTCAGGAGACATTTAAACACACACGAGACGGTGAAGAGTCTTAAATGTACGCAATGTGAATACACAACAAAGCAAAAGGATTGCCTTAAGGATCATCTTGAAACTCATGAGGCGGTGAAACGATTTAAATGTTCGCAATGTGACTACACAACACATCGGGGATTCCATTTTAAGAACCATTTAGCTAAGCACCACGCGGTAAAGCCATACTCATGTTCAAAATGCGACTTTGTGACGCATTCACAAAGGAATCTTCGGAATCATTTATATACGCACGAGACGGTGCCACGATTCGGATGCCCACAATGTGATTACGTTGGGAAATCTAGGAGCTCTCTCGCAGAACACGTCCCCTTGCACAAGTCGAAAGATTTAAAATGTCCGTTATGCGACTATGTGACGAACAATAAACGTTATTTGAAAGTGCATTCCACCACTCACGATATTGTGAAACGGTTTAAGTGTTCCGAATGTGACTTCGCTACGACCAGTAAAGAGAGTCTCAGATCTCATGTTGCTAGACACACTACCGAGAAATCTTTGAAATGTCCTTTATGCGACTACATGACGCGCGAGAAACGTTATTTGGAACGGCATTCTAGTAGTCACGAAACTGTGAAGCGCTTTAAATGCTCCGAATGTGACTACGCCTCGGCTGGCAGACATAATCTTAGAAAGCATTCCATCAAGCACAACACTGATAAATCGTTTAAATGTGCCGAATGTGACTACGTGACGAATCGTAAAGAGTATCTCATACCACACTTCAAAATACACGTGATGAAATTTAAGTGCACCGAATGCGAATACGCCACACACAAGAACTCTCGTTTTAATAGGCATATGCTTGAAATGCACAAGACTGTAAAACGATTTAAATGTTCCCAATGTGCTTATGCCACGAATACTAAGAGCAACCTCAGAAGTCATTCTCGTATTCATGATGCCGTTACACCGTTGAAATGTTCGCGATGTGAATTTGAAACCAAATATAAACATAACCTGAAAACACatcaaaaaaaatgtatttaa
Protein Sequence
MMGASVSATSGKKTNFGCGGSIMIWRSSEAKTELEVIYNGSMTVDRQCILLAPEAETLLSTKLNRQPYVQNETPILRAATVHNQDGDKRFECFLCEYVTNRKTLLDAHYRSDHFIDGKLKCPQCEYESHRRHILKVHMIKHLGVKRFKCLQCDFTTNFTRGLRRHLNTHETVKSLKCTQCEYTTKQKDCLKDHLETHETVKRFKCSQCDYTTHRRHNLKNHLAKHYTARQNTRKQCILLAPEAETLLSTKLNRQPFDQNETPILRTATVHNQDGDKRFACFLCEYVTNRKTLLDAHYRSDHFIDGKLKCPQCEYESHRRHILKVHMIKHLGVKRFKCLQCDFTTNFTRGLRRHLNTHETVKSLKCTQCEYTTKQKDCLKDHLETHEAVKRFKCSQCDYTTHRGFHFKNHLAKHHAVKPYSCSKCDFVTHSQRNLRNHLYTHETVPRFGCPQCDYVGKSRSSLAEHVPLHKSKDLKCPLCDYVTNNKRYLKVHSTTHDIVKRFKCSECDFATTSKESLRSHVARHTTEKSLKCPLCDYMTREKRYLERHSSSHETVKRFKCSECDYASAGRHNLRKHSIKHNTDKSFKCAECDYVTNRKEYLIPHFKIHVMKFKCTECEYATHKNSRFNRHMLEMHKTVKRFKCSQCAYATNTKSNLRSHSRIHDAVTPLKCSRCEFETKYKHNLKTHQKKCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-