Asol069028.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- -
- Assembly
- GCA_963170755.1
- Location
- OY720677.1:143401049-143403825[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00034 0.11 16.1 2.6 3 23 195 215 194 215 0.97 2 13 2.3e-06 0.00074 23.0 1.0 1 23 221 243 221 243 0.98 3 13 0.04 13 9.6 2.3 1 23 249 272 249 272 0.97 4 13 0.12 39 8.1 1.3 3 21 280 298 278 299 0.88 5 13 2.2 7.2e+02 4.1 0.3 2 12 320 330 319 339 0.74 6 13 3.2e-06 0.0011 22.5 0.7 3 23 353 373 352 373 0.99 7 13 0.0032 1.1 13.0 1.0 1 23 379 401 379 401 0.98 8 13 1.1e-05 0.0036 20.8 2.6 1 23 407 429 407 429 0.98 9 13 4.8e-06 0.0016 21.9 1.9 3 23 436 456 435 456 0.97 10 13 6e-07 0.0002 24.8 2.8 1 23 462 484 462 484 0.98 11 13 6.8e-07 0.00022 24.6 3.7 1 23 490 512 490 512 0.98 12 13 5.3e-05 0.017 18.6 2.5 1 23 518 540 518 540 0.98 13 13 0.00014 0.046 17.3 1.3 1 23 551 574 551 574 0.93
Sequence Information
- Coding Sequence
- ATGTCGGACTTATTCGATGAATCGAAAGATTTATGCAATTTATTTAGGAAATTTGTTAACATTGAGTTGGAAAAAAATGAGACATTACCCAATTATTTATGCAGCATTTGTGAAGAAAAAATACTAATTTGTCAGGATTTTATAAATCAATGCAAGAAAACCAATGATCTATTAGAAAAATACAAAGAATGTGACTTTAAAAATGAACAGGAAGACACGAAATTGTGTTTAGAATCAGTCCCTGTTACGGAAATTGTACAATTCATTGCAAACGACGATACCAGCAATGATTCTAAaatttgtcagatcgttgacaaTGGCATATGTAAAAATCAGCGAAAGTCACGACTAAAACAGTTTTCGAATGACGAAGTAATGCAAGTGATTGAAGAAGAGAAAAAGAAATTTAGCGCTGCCAGAAATTGTTGCAAATGTAATTTCCGTGCCAGGAATTTTCGATCTTTATCACTCCATATATCATTTGTACATAAAGAGATCAAGGAGAATTGGTGTTCAACTTGTAATGCTGTGTTTGATGATTTGAAACAACATTCTGGTACTCACCAAAATAACGAAAATAATTGTCAATTTTGTGGAAAAACATTTTCAGTAAGAGGTCACTTTTTACAGCATTTACTGAGTCATGCAACTATTCGCCCATACAAATGTGATGTCTGTGATAAAAGCTTTgttaataccaagaatttacgtGTTCATAATAAAATTCATACACgagaaaaacaatttgtttgtaaTTATTGCACAAGttcatttttgaaattaaatcaGTTAAAAACGCATTTGAAGAAAGATCATGAAAATGGATCAGAAACCCGTTGCATTTATTGTAAATACGTGTTTGAAACAGACGATCAGCTTAGGAAACATGAATGCACGGCTAATATCAAGCAGAGCGATATGGATGTGTCCACAAATATTTATCTTGGTAAACAAAATTATTGCACTATTTGTGGAAAGAATGTTCGTAGTTTAACGATTCATAATAAGAATGTTCATGAAACTGTAGAATCTGATGAATATAATACTATGAAATTATGCACAGTCTGTGGTAAACAATTCAAGAGTTTTTCGAAGCTTGAAGTGCATATGCGGATACATACGGGAGAAACTCCTTACAATTGTAGTTATTGCGATAGAAAAATGGCCACGAGAAACCTTCTAGTAACACATGAACGGACACATACTGGTGAACGGCCTTACATATGTCATGTATGTAATAAGAGTTTTACACAGTCGAGTATTTTAAACACCCATATGAAATTGCACACAGGACGTCCAGAGATTTGTATGCTTTGTGGTAAGAAATTTTGTAGACCGGCTGAGTTAAGGTTACACATGAGAAAGCACACAGGAGAAAAACCATTTGTTTGTTCCTATTGTGGAAAGAGTTTTATCCAGAGGAGCCATCTAGTGGAGCATACCAAGAGGCATACTGACGACAAACCTTTCAAATGTGCCCATTGTGATAAGAGTTTCCGTCAGAGGTCTTCATTAAAAACACATGTTCAAATTCACTTGGGCGAAAAACCCTTCAAATGCAGCCAATGTCCGTATGCTTGCAGACAGAGCTATAGTTTAACCATTCACATGGCCAAACACAGCGATGATGCACCTCGATTAGACAGACCGCATTCCTGTGATTACTGCACTAAAACTTTCACAACTATGGCCATGTTAAATTCTCACCTGGCAAATGTACATATGACTGTCTGTATTAAATaa
- Protein Sequence
- MSDLFDESKDLCNLFRKFVNIELEKNETLPNYLCSICEEKILICQDFINQCKKTNDLLEKYKECDFKNEQEDTKLCLESVPVTEIVQFIANDDTSNDSKICQIVDNGICKNQRKSRLKQFSNDEVMQVIEEEKKKFSAARNCCKCNFRARNFRSLSLHISFVHKEIKENWCSTCNAVFDDLKQHSGTHQNNENNCQFCGKTFSVRGHFLQHLLSHATIRPYKCDVCDKSFVNTKNLRVHNKIHTREKQFVCNYCTSSFLKLNQLKTHLKKDHENGSETRCIYCKYVFETDDQLRKHECTANIKQSDMDVSTNIYLGKQNYCTICGKNVRSLTIHNKNVHETVESDEYNTMKLCTVCGKQFKSFSKLEVHMRIHTGETPYNCSYCDRKMATRNLLVTHERTHTGERPYICHVCNKSFTQSSILNTHMKLHTGRPEICMLCGKKFCRPAELRLHMRKHTGEKPFVCSYCGKSFIQRSHLVEHTKRHTDDKPFKCAHCDKSFRQRSSLKTHVQIHLGEKPFKCSQCPYACRQSYSLTIHMAKHSDDAPRLDRPHSCDYCTKTFTTMAMLNSHLANVHMTVCIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -