Asol048045.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- -
- Assembly
- GCA_963170755.1
- Location
- OY720677.1:19995525-19997837[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.15 48 7.8 1.2 1 23 21 44 21 44 0.98 2 24 0.00023 0.076 16.6 1.1 1 23 50 73 50 73 0.97 3 24 0.0028 0.93 13.2 4.8 1 23 79 102 79 102 0.98 4 24 0.023 7.4 10.4 2.6 6 23 136 154 132 154 0.93 5 24 0.36 1.2e+02 6.6 0.7 1 23 160 183 160 183 0.95 6 24 0.029 9.6 10.0 1.1 1 23 219 242 219 242 0.97 7 24 0.00044 0.14 15.8 1.3 1 23 248 271 248 271 0.98 8 24 0.0022 0.72 13.6 2.0 1 23 277 300 277 300 0.98 9 24 0.0075 2.5 11.9 3.0 1 23 306 329 306 329 0.98 10 24 0.082 27 8.6 1.5 2 23 336 358 335 358 0.94 11 24 0.00014 0.045 17.4 2.5 1 23 364 387 364 387 0.98 12 24 0.00035 0.11 16.1 1.9 1 23 391 414 391 414 0.98 13 24 0.0055 1.8 12.3 3.6 1 23 420 443 420 443 0.94 14 24 0.6 2e+02 5.9 3.3 1 23 449 472 449 472 0.94 15 24 0.015 4.9 11.0 1.6 1 23 478 501 478 501 0.96 16 24 0.0032 1 13.1 1.1 1 23 507 530 507 530 0.98 17 24 0.0051 1.7 12.4 6.5 1 23 536 559 536 559 0.98 18 24 0.0083 2.7 11.7 2.7 1 23 565 588 565 588 0.98 19 24 0.0037 1.2 12.9 1.1 1 23 594 616 594 616 0.98 20 24 0.0017 0.55 13.9 2.6 1 23 627 650 627 650 0.98 21 24 0.00012 0.039 17.6 3.7 1 23 656 679 656 679 0.98 22 24 0.0083 2.7 11.7 2.7 1 23 685 708 685 708 0.98 23 24 0.0056 1.8 12.3 1.3 1 23 714 737 714 737 0.98 24 24 0.0017 0.55 13.9 2.6 1 23 743 766 743 766 0.98
Sequence Information
- Coding Sequence
- ATGGACAAACCAATAACACAAAGTAAAAGACGCAAGATGAGGCATTTTCAACAATTGAAGTTTAAATGTGAATTATGTGAATACAGGGCACAGCAGAAGAGTTACGTAGAATATCATACGAAAACGGTACATCTTAACCAATTCGATTATAATTGCGGGTCTTGCGAATACAAGACAAATAGGAAGGATAACTTGCAACAACATATAAAAACAGTACATCTGAAACAATATGATTATAAGTGTGACACTTGCGATTTTGgcacaaacactaaaaatcatCTAGAACATCACATACAATCGAAACATGTTGAGGAATTTAAGTATAAGTGTCAGCATTGCGAATACAAGACAAATAAAAAGCGTTATTTAGAATGTCACGAGAAAAAAAATCACCTTTGCGGGTGTTGCAAATACAAGACAAACAGGAAGGATAACTTGCAACAACATATAAAAACAGTACATCTGAAACAATATGATTATAAGTGTGACACTTGCGACTTTGGGACAAACACTAAAAATGATCCAGAACAACACATACAATCGAAACATGTTGGGGAATTTGAGTATAAGTGTCAACATTGCGAATACAAGACAAATAAAAAGCATTATTTAGAATGTCACGAGAGAGAAAATCACCTTCAAAGAAATACTTATTATAACTGTGAGTCTTGCGTGTACAAAACCAAGAGAAGACAAAATTTAGTGCTACACGTGAAAACGGAACATCTACAACAATTTAAGTAtgagtgtgactcttgtgaatacaCGACAAATCGAAAAAGTAATTTCGAAGAACATACGAAAACGGTACATCTTAAATCATTTGACTATAAGTGTCAGACGTGCGAATACAAAACAAATCGACAGGCTGATTTGTTGCAACATACAAAGAGGATGCATCTTAAACAATATGATTATAAGTGTGAGATATGTGATTTCAAGACACactataaaaagaatttagaagGACACATACAATCAAAACATGGTAGGGAATTTACTATTGAGTGTCAGCATTGTGAATACAAAACCAATGCAAAATCGTACTTAGAAAGTCACGTAAAATTAAAGCATGTTacaaaatttgattataagtgtgaatATTGTGAATATACAACAAAACTAAAgacaaatttagaaaaacatacaAAAACGGTTCATCTTAAACAATTTGAGTGTGATACATGTGAATACAAGACAAATCGGCGGGCTAATTTGCAAAATCATACAAAAACGACACATGTTGagcaatttgattttaagtgtcaGTCATGTGAATACAAGACAAATAGAAAGGATCATTTGCAAAAACATGAAAAAGCGATACATCTTAAACAATATGATTATAAGTGTGAGACATGTGATTTTGGGACGAATTGTAAAAGTCATCTAGAAGTGCATGTTCAAGCGAAACATGTTAAGGAATTCAGTTATAAGTGTCAATATTGTGAATACAAAGCCAATGCAAAATCGTACTTAGAAAAGCACGTAAAATTAAAGCATCTTccagaatttgattataagtgtgagtCTTGTGAATATATAACAAAACAAAAGACAAATTTAGACATACATACAAAAACGGTTCATCTTAAAGAATTTGACTATAAGTGTGATACATGTGAATATAGGACAAATAGAAAGTATTGTTTAGAAAAGCATAGAAAAACGACACATCTTAAACAATATGATTATAAGTGCGAGACATGTGATTTTGGGACGAATTATAAAAATCATCTGGAACTGCACGTACAAACGAAACATGTTAAGGAAATCAGTTATAAGTGTCAATATTGTGAATACGAAGCAAAAGTAAAGACTTACTTAGAAAGGCACTTAGAAAGGCACGTAAAATCAAACCATcttaaagaatttgattataagtgtgggTCTTGTGACTTCAAGACATATCGGAAGGATTATTTGGAAAAACATACAAAAACGGTTCATCTTAAACAATTTGACTATAAGTGTGATACATGTGAATATAGGACAAATAGAAAGtataatttagaaaaacatacaAAAACGACGCATCTTAAACAATATGATTATAAGTGTGAGACATGTGATTTTGGGACGAATTATAAAAATCATCTGGAACTGCACGTACAAACGAAACATGTTAAGGAAATCAGTTATAAGTGTCAATATTGTGAATACGAAGCAAAAGTAAAGACTTACTTAGAAAGGCACGTAAAATCAAACCATcttaaagaatttgattataagtgtgggTCTTGTGACTTCAAGACATATCGGAAGGATTATTTGGAAAAACATACAAAAACAGTTCATCTTAAACAATTATAG
- Protein Sequence
- MDKPITQSKRRKMRHFQQLKFKCELCEYRAQQKSYVEYHTKTVHLNQFDYNCGSCEYKTNRKDNLQQHIKTVHLKQYDYKCDTCDFGTNTKNHLEHHIQSKHVEEFKYKCQHCEYKTNKKRYLECHEKKNHLCGCCKYKTNRKDNLQQHIKTVHLKQYDYKCDTCDFGTNTKNDPEQHIQSKHVGEFEYKCQHCEYKTNKKHYLECHERENHLQRNTYYNCESCVYKTKRRQNLVLHVKTEHLQQFKYECDSCEYTTNRKSNFEEHTKTVHLKSFDYKCQTCEYKTNRQADLLQHTKRMHLKQYDYKCEICDFKTHYKKNLEGHIQSKHGREFTIECQHCEYKTNAKSYLESHVKLKHVTKFDYKCEYCEYTTKLKTNLEKHTKTVHLKQFECDTCEYKTNRRANLQNHTKTTHVEQFDFKCQSCEYKTNRKDHLQKHEKAIHLKQYDYKCETCDFGTNCKSHLEVHVQAKHVKEFSYKCQYCEYKANAKSYLEKHVKLKHLPEFDYKCESCEYITKQKTNLDIHTKTVHLKEFDYKCDTCEYRTNRKYCLEKHRKTTHLKQYDYKCETCDFGTNYKNHLELHVQTKHVKEISYKCQYCEYEAKVKTYLERHLERHVKSNHLKEFDYKCGSCDFKTYRKDYLEKHTKTVHLKQFDYKCDTCEYRTNRKYNLEKHTKTTHLKQYDYKCETCDFGTNYKNHLELHVQTKHVKEISYKCQYCEYEAKVKTYLERHVKSNHLKEFDYKCGSCDFKTYRKDYLEKHTKTVHLKQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -